Streptomyces coelicolor: SCO5494
Help
Entry
SCO5494 CDS
T00085
Symbol
SC8D9.06
Name
(GenBank) putative DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sco
Streptomyces coelicolor
Pathway
sco03030
DNA replication
sco03410
Base excision repair
sco03420
Nucleotide excision repair
sco03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCO5494 (SC8D9.06)
03410 Base excision repair
SCO5494 (SC8D9.06)
03420 Nucleotide excision repair
SCO5494 (SC8D9.06)
03430 Mismatch repair
SCO5494 (SC8D9.06)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sco03032
]
SCO5494 (SC8D9.06)
03400 DNA repair and recombination proteins [BR:
sco03400
]
SCO5494 (SC8D9.06)
Enzymes [BR:
sco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCO5494 (SC8D9.06)
DNA replication proteins [BR:
sco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCO5494 (SC8D9.06)
DNA repair and recombination proteins [BR:
sco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCO5494 (SC8D9.06)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCO5494 (SC8D9.06)
MMR (mismatch excision repair)
DNA ligase
SCO5494 (SC8D9.06)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCO5494 (SC8D9.06)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
CAB37570
Kitasato:
SCO5494
UniProt:
Q9Z585
LinkDB
All DBs
Position
5978785..5980992
Genome browser
AA seq
735 aa
AA seq
DB search
MAGDKQGDKQAETTSVPAEARERHAQLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEE
LEERHPELRTPESPTQKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFERIARELGE
QEYHFLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVP
DLVEIRGEVYFPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVH
GIGTLEGYSGLTRLSQAYDLLKAWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEID
GVVVKVDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEP
VTVAGSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP
AECPECGTPLKAMKEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVVAAALTG
PLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKIATVFANKEGEP
KKNTLALLQHIEEAKTRPLARFINGLSIRYVGPVAAQALAREFRSIDRIEQATEEELAST
DGVGGAIATAVKEWFAVDWHREIVRKWKAAGVPLEDRSTGEDEGPRPLEGLTVVVTGTLE
NFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFAVLLE
QGPEAAADVALSAEE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcagggcgacaagcaggcggagacgacgagtgtgcccgccgaggcg
cgggagcggcacgcgcagctcgccgagcagatcgaggagcaccgcttccggtactacgtg
aacgacgcgcccgtcgtcagcgacgcggagttcgaccggctgctgcgcaccctggaggag
ctggaggagcggcacccggagctgcgcacccccgagtccccgacccagaaggtcgccggc
gcctacgcgaccgagttcacggccgtgcagcaccccacgcggatgctctccctggacaac
accttcaacgacgacgagctggccgcctggttcgagcgcatcgcccgggagctgggcgag
caggagtaccacttcctgtgcgagctgaaggtcgacggactcgccgtcaacctcacctac
gagcgcggccgcctcgtccgcgccgccacccgcggcgacggccgcaccggcgaggacatc
acgcccaacgtccgcaccatcgccgagatccccgaccgcctggcgggcgacaaggtcccc
gacctggtggagatccggggcgaggtctacttcccgatggagaagttccaggagctcaac
gcccggttgaacgaggcgggggacaagcccttcgccaacgcgcgcaacgcggcggccggt
tcgctgcgccagaaggacccgcgcgtcaccgcctcccgcccgctgcacatggtggtccac
ggcatcggcaccctggagggctactcgggcctgacccgcctctcccaggcgtacgacctg
ctgaaggcctggggcctgcccacctccccgcacaaccgggtggtcgacggcctggacggc
gtacgcgagttcatcgcgtactacggcgagaaccggcactccgtcgcgcacgagatcgac
ggcgtcgtcgtcaaggtcgacgagatccgcctccagggccggctcggctccaccgcccgc
gcgccccgctgggccatcgcctacaagtacgcgccggaagaggtcaacaccaagctggtc
gacatcaaggtgggcgtcggccgcaccggccgcgtcacgccgtacgcgcaggtcgagccg
gtcacggtggccggcagcgaggtggagttcgccaccctgcacaaccaggaggtcgtcaag
gccaagggcgtgctcatcggcgacaccgtggtgctgcgcaaggccggtgacgtgatcccg
gagatcctcgggccggtcgccgacctcagggacggcagcgagcgggagttcgtgatgccg
gccgagtgccccgagtgcgggacgccgctgaaggcgatgaaggagggcgacatcgacctc
cgctgccccaacgcccgcgcctgcccggcccagttgcgcgagcgggtcgcctacctcgcg
ggccgggagtgcctggacatcgagcacttcggcggggtcgtggcggccgcgctgaccggg
ccgctggagccgtccgagccgcccctggtggacgagggcgacctcttcgacctcaccgtc
gagaagctgctgcccatcaaggcgtacgtcctcgaccccgacagcgggctgcccaagcgc
gaccccaagaccggcgaggagaagatcgccacggtcttcgccaacaaggagggcgagccg
aagaagaacaccctcgcgctgctccagcacatcgaggaggccaagacccgcccgctggcc
cgcttcatcaacggcctctccatccggtacgtcgggccggtcgccgcccaggccctggcc
cgcgagttccgctccatcgaccgcatcgagcaggccaccgaggaggagcttgcgagcacg
gacggggtgggcggcgccatcgccaccgccgtcaaggagtggttcgcggtggactggcac
cgcgagatcgtgcgcaagtggaaggcggccggggtcccgttggaggaccggtcgacgggg
gaggacgaagggccgcgcccgctcgaaggactcaccgtcgtcgtcaccggcaccctggag
aacttcacccgggacggcgccaaggaagccctccagagccggggcgcgaaagtgaccgga
tcggtgtccaagaagacgtcgttcgtcgtggtcggtgacaaccccggttcgaagtacgac
aaggcgatgcaactgaaggtgccggttctgaacgaggacggtttcgccgttctgctcgaa
caaggacccgaagcggcggcggatgtcgcgctttcggctgaggaatag
DBGET
integrated database retrieval system
