Streptomyces coralus: QU709_11900
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Entry
QU709_11900 CDS
T09650
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scoa
Streptomyces coralus
Pathway
scoa03030
DNA replication
scoa03410
Base excision repair
scoa03420
Nucleotide excision repair
scoa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QU709_11900 (ligA)
03410 Base excision repair
QU709_11900 (ligA)
03420 Nucleotide excision repair
QU709_11900 (ligA)
03430 Mismatch repair
QU709_11900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scoa03032
]
QU709_11900 (ligA)
03400 DNA repair and recombination proteins [BR:
scoa03400
]
QU709_11900 (ligA)
Enzymes [BR:
scoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QU709_11900 (ligA)
DNA replication proteins [BR:
scoa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QU709_11900 (ligA)
DNA repair and recombination proteins [BR:
scoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QU709_11900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QU709_11900 (ligA)
MMR (mismatch excision repair)
DNA ligase
QU709_11900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QU709_11900 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Zn_ribbon_TFIIB
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
WLW52036
LinkDB
All DBs
Position
complement(2727040..2729232)
Genome browser
AA seq
730 aa
AA seq
DB search
MAGDKQAETTVPAEAREQHAKLAEQIEEHRFRYYVNDAPVISDAEFDKLLRTLEALEEEH
PELRTPDSPTQKVAGAYETEFTAVQHRSRMLSLDNAFSDEELAAWAERVAKDVGAPDYHL
LCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDAVPDLVEI
RGEVYFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAL
EGFDGMTRLSEAYDLLKTWGLPTSPHAKVVDDLDGVREFIAYYGENRHSVEHEIDGVVVK
LDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKLKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPSECPE
CGTALRPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKSLDIEHFGYVAAAALTRPLEPA
EPPLTDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKVATVFANQQGEPKKNAL
GMLENIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSVDRIEQASEEELAATDGVGP
IIAKSLKEWFSEEWHQEILRKWKAAGVRMEEEGSGEDEGPRPLEGLTVVVTGTLERFTRD
GAKEALQIRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFTVLLEQGPEA
AAEVALPAEE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacggtgcccgccgaggcacgggagcagcacgcg
aagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaacgacgctccggtc
atcagcgacgcggagttcgacaagctcctgcgcaccctggaggcgttggaggaggagcac
ccggagctgcgcaccccggactcgccgacccagaaggtcgcgggtgcctacgagacggag
ttcacggccgtccagcaccgctcccgcatgctctccctcgacaacgccttcagcgacgag
gaactcgccgcctgggccgagcgcgtggccaaggacgtcggcgcgcccgactaccacctg
ctgtgcgagctcaaggtcgacggcctcgccgtcaacctcacctacgagcacggccgcctc
acgcgcgcggcgacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtccgg
acgatcgccgagatcccggaccgtctgaagggcgacgccgtgccggacctcgtggagatc
cgcggcgaggtctacttcccgatggagaagttccaggagctcaacgcccgcctggtcgag
gccggcgacaagcccttcgccaacccgcgcaacgcggcggccgggtcgctgcgccagaag
gacccgcgcgtcaccgccacccgccccctgcacatggtcgtccacggcatcggcgcgctg
gagggcttcgacggcatgacccgcctctccgaggcctacgacctgctgaagacctggggc
ctgcccacctccccgcacgccaaggtggtcgacgacctggacggcgtacgggagttcatc
gcgtactacggcgagaaccgccactccgtggagcacgagatcgacggcgtggtcgtcaag
ctggacgagatccccctccagggccgcctcggctccacctcgcgcgccccgcgctgggcg
atcgcctacaagtacgcgccggaggaggtgaacaccaagctcatcaacatccgggtggga
gtgggccgcacgggccgggtcacgccgtacgcccaggtggaacccgtcacggtcgcgggc
tcggaggtcgagttcgccaccctgcacaaccaggacgtcgtgaagctgaagggcgtcctc
atcggcgacaccgtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggaccg
gtcgtggacctgcgcgacggcagcgagcgcgagttcgtgatgccgtccgagtgccccgag
tgcgggaccgcgctccggccgatgaaggagggcgacgtcgacctgcgctgcccgaacgcc
cgcacctgccccgcccaactgcgcgaacgcctgttctacctcgcgggccgcaagtcgctg
gacatcgagcacttcggctatgtcgccgccgcggccctcacccggccgctggagccggcc
gagccgccgctcaccgacgagggcgacctgttcgacctgaccatcgaacaactgctgccc
atcaaggcgtacgtcctcgaccaggacagtgggctgcccaagcgtgacccgaagaccggc
gaggagaaggtcgccaccgtcttcgccaaccagcagggtgagcccaagaagaacgcgctc
ggcatgctggagaacatcgcggccgcgaaggagcgcccgctggcccgtgtcctgaccggc
ctgtccatccgccacgtgggaccggtcgccgccgaggcgctggcgcgcgagttccgctcg
gtcgaccgcatcgagcaggcgagcgaggaggagctggcggccaccgacggcgtcggcccg
atcatcgcgaaatcactcaaagagtggttctccgaggagtggcatcaggagatcctccgc
aagtggaaggccgccggcgtccgcatggaggaggagggctccggcgaggacgagggcccg
cgtcccctggagggcctcaccgtcgtcgtgaccggcacactcgagcgcttcacccgggat
ggcgccaaggaggcgttgcaaattcgtggcgccaaagtgaccggttctgtttcgaagaag
acgtctttcgtcgttgtgggtgacaatccaggttcgaagtacgacaaggcgatgcagctg
aaggtgccggtcctcaacgaggacggcttcaccgtcctgctggaacagggaccggaggcg
gccgccgaagtcgcgcttccggcagaggagtag
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