Streptomyces coeruleorubidus: CP976_30305
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Entry
CP976_30305 CDS
T07302
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scoe
Streptomyces coeruleorubidus
Pathway
scoe03030
DNA replication
scoe03410
Base excision repair
scoe03420
Nucleotide excision repair
scoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP976_30305 (ligA)
03410 Base excision repair
CP976_30305 (ligA)
03420 Nucleotide excision repair
CP976_30305 (ligA)
03430 Mismatch repair
CP976_30305 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scoe03032
]
CP976_30305 (ligA)
03400 DNA repair and recombination proteins [BR:
scoe03400
]
CP976_30305 (ligA)
Enzymes [BR:
scoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP976_30305 (ligA)
DNA replication proteins [BR:
scoe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP976_30305 (ligA)
DNA repair and recombination proteins [BR:
scoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP976_30305 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP976_30305 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP976_30305 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP976_30305 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QEV27985
UniProt:
A0A5J6IH35
LinkDB
All DBs
Position
6521486..6523681
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTTVPAEAREKHARLAEQIEEHRFRYYVKDAPVVSDAEFDELLRSLEALEEE
FPELRTPDSPTQKVAGSYETEFTAVEHRQRMLSLDNTFNDEEMAAWTERIARELGEQDYH
FLCELKVDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTIAEIPERLKGDSVPDLVE
IRGEVYFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFSGLTRLSQAYDLLKTWGLPTSRHNKVVDGLDGVREFIAYFGENRHSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECP
ECGTALRPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVAAAALTKPLEP
EDPPLVDEGDLFDLTVEQLLPIKAYVLDADSGLPKRDPKTGEEKVATIFANQEGQPRKNA
LAMLENIAAAKQRPLARIITSLSIRHVGPVAAEALAREFRSIERIDQATEEELAVTEGVG
PTIAASLKQWFAEDWHREIIRKWKAAGVRMEEESTGEDEGPRPLEGLTVVVTGTLEHFTR
DGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQLKVPVLNEEGFGVLLEQGPD
AAAEVALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacgacggtgcccgccgaggcacgggagaagcac
gcgcgcctcgcggagcagatcgaagagcaccgcttccgctactacgtgaaggacgctccc
gttgtcagcgacgcggagttcgacgagctgctgcgttccctggaggcactggaggaggag
ttcccggagctgcgtaccccggactcgccgacccagaaggtcgccggttcgtacgagacg
gagttcacggcggtcgagcaccgccagcgcatgctctccctcgacaacaccttcaacgac
gaggagatggccgcctggacggagcgcatcgccagggaactgggcgagcaggactaccac
ttcctgtgcgagctgaaggtcgacggcctcgccgtgaacctcacctacgagcgcggccgt
ctcacgcgcgcggcgacccgcggcgacggccgcacgggcgaggacatcacaccgaacgtc
cggacgatcgcggagatccccgagcgcctcaagggcgactccgtccccgacctcgtggag
atccgcggcgaggtctacttcccgatggagaagttccaggagctgaacgcccgtctggtc
gaggccggtgacaagccgttcgccaacccgcgcaacgcggcggccggttcactgcgccag
aaggacccgcgggtcacggccacccgcccgctgcacatggtggtccacggcatcggcgcc
ctggagggcttcagcggcctgacccgcctgtcccaggcctacgacctgctgaaaacctgg
ggtctgcccacctcccggcacaacaaggtggtcgacggcctcgacggcgtacgggagttc
atcgcgtacttcggcgagaaccgccactccgtggagcacgagatcgacggcgtggtcgtc
aagctcgacgagatcccgctccagggccgcctcggctccacctcgcgcgccccgcgctgg
gcgatcgcgtacaagtacgcgccggaggaggtcaacaccaagctcgtcaacatccgcgtg
ggcgtgggccgcacgggcagggtcacgccgtacgcccaggtcgagccggtcacggtcgcg
ggctccgaggtcgagttcgccacgctgcacaaccaggacgtggtcaaggccaagggcgtc
ctcatcggtgacacggtggtgctgcgcaaggccggtgacgtcatcccggagatcctcgga
ccggtcgccgacctgcgtgacggcagcgagcgcgagttcgtgatgccggccgagtgcccc
gagtgcggtacggctctcaggccgatgaaggagggcgacgtcgacctgcgctgcccgaac
gcccgcacctgcccggcccagttgcgcgagcgcctgttctacctcgcgggccgcaaggcg
ctggacatcgagcacttcggctacgtcgccgccgccgcgctcaccaagccgctggagccc
gaggacccgccgctggtggacgagggcgacctgttcgacctcaccgtcgaacagctcctg
cccatcaaggcgtacgtcctcgacgccgacagcggtctgcccaagcgcgacccgaagacc
ggcgaggagaaggtcgccacgatcttcgccaaccaggagggccagccccgcaagaacgcg
ctcgccatgctggagaacatcgctgcggccaagcagcgtcccctcgcccggatcatcacc
agcctgtcgatccgtcacgtcggaccggtcgccgccgaggcactggcccgcgagttccgc
tcgatcgagcgcatcgaccaggccacggaggaggagctggcggtcaccgagggcgtcggc
ccgaccatcgccgcctctctcaagcagtggttcgccgaggactggcaccgcgagatcatc
cgaaagtggaaggccgccggcgtccgcatggaggaggagagcaccggcgaggacgaggga
ccccgcccgctcgaagggctcaccgtcgtcgtcacgggcaccctcgaacacttcacgcgc
gacggcgccaaggaggccttgcagagccgcggagcgaaggtgaccggctcggtttcgaaa
aagacgtcattcgtcgttgtgggtgacagtcctggatcgaaatacgacaaggcgatgcag
ctgaaggtcccggtcctgaacgaggagggtttcggggtcctgctggagcagggaccggac
gcggcggcggaagtcgccctttcggccgaggagtag
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