Snodgrassella communis: PYG29_00070
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Entry
PYG29_00070 CDS
T09364
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scom
Snodgrassella communis
Pathway
scom03030
DNA replication
scom03410
Base excision repair
scom03420
Nucleotide excision repair
scom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PYG29_00070 (ligA)
03410 Base excision repair
PYG29_00070 (ligA)
03420 Nucleotide excision repair
PYG29_00070 (ligA)
03430 Mismatch repair
PYG29_00070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scom03032
]
PYG29_00070 (ligA)
03400 DNA repair and recombination proteins [BR:
scom03400
]
PYG29_00070 (ligA)
Enzymes [BR:
scom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PYG29_00070 (ligA)
DNA replication proteins [BR:
scom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PYG29_00070 (ligA)
DNA repair and recombination proteins [BR:
scom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PYG29_00070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PYG29_00070 (ligA)
MMR (mismatch excision repair)
DNA ligase
PYG29_00070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PYG29_00070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WMY92862
LinkDB
All DBs
Position
complement(20566..22986)
Genome browser
AA seq
806 aa
AA seq
DB search
MDTVSEQQIIDLTALLNRYAHEYYDLDAPTVPDAEYDRLFRELQALEEQYPQWRQPDSPS
MRVGGRAQQKFTAVVHQIPMLSLNNAFSPLDDNNQFDHSEMHAFDKRVRDGLGAEPEYIV
EPKFDGLAISLLYRDGLLVQASTRGDGYTGEDVTANVRTIVNIPLRLHGDNMPDILEVRG
EVLMLKADFERLNAHQQAENQKTFANPRNAAAGSLRQLDPKITARRRLHFYAYGIARLDE
HFVADSHSEELALLARWGLTVPPQNTLCYQADIKKVLAFYEHIYQIRADLPFGIDGVVIK
VDNLAQQEQLGYVARAPRFAIAQKFPAEEMLTTVEAIDVQVGRTGAITPVARLTPVFVGG
VTVTNATLHNEGEAQRKDVREGDTVIVRRAGDVIPEIVSVVLAQRPMVEEKTDLLTPAQA
VPKFPPFRMPQHCPVCGHEIVREEGEAVVRCSGGMLCQAQRVQALIHFASRRAMDIENLG
ERQIELLVAQGRVHHFADVYRLQLADLLAMKQQAKQEAADSAEAAADELALATTGKAAKQ
QPSRWAENILAGIEASRQCPLANLIYALGIFHVGERTAKQLAQAFGDLSTLTQATEPLLA
CLPDIGTVVAHSVAYFFSQEDQTGQLQELLDAGVEPQAETRRIPLREYFTPERVLARLPG
AGLTETRAQKLWQLVGMDWSQLLTDKALPESWQHWCAQPENRLLLQKTIALREQLLAGEP
EEIAPTANEAVAGKTFVLTGTLPDWSRDVAQQHIEEAGGKVSSSVSKKTDFVVAGAEAGS
KLSKAEALGVTILDQAALMAMLGIKE
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggatacagtaagcgaacagcaaattattgatttaactgcactgcttaatcgctatgca
catgagtattatgatctggatgcgcctactgtaccggatgccgaatatgaccggctgttc
cgcgaattacaggctctggaagagcagtatccgcaatggcgccagccagatagtcccagt
atgcgcgtgggcgggcgcgcacagcaaaaatttactgctgtggtgcatcagattcccatg
ttgtcactaaataatgcgttttcgccactggacgataataatcagtttgaccatagtgaa
atgcatgcttttgataagcgcgtgcgtgatggtttgggtgctgagcctgaatatattgtc
gaacctaaatttgatggtctggccatcagcttgctttatcgcgatggtctgctggtgcag
gcatcaacccgtggcgatggctatactggtgaggatgtcaccgctaacgtgcgtaccatt
gtaaatattcctttgcgtctgcatggggataatatgcccgatatactggaggttcgcggt
gaagtgctgatgctgaaagccgattttgagcggcttaatgcacatcagcaggctgaaaat
cagaaaacatttgccaatccgcgcaatgcagcggcaggcagcttgcgccagctggatccg
aaaatcactgcacgccggcgcctgcatttttacgcttacggaattgccagactggacgag
cattttgtagcggatagtcacagtgaagagctggcactgctggcacgttggggcttgacc
gtaccgccacagaatactttgtgttatcaggctgatatcaaaaaagtgctcgcattttat
gagcatatttatcagatacgcgcagatttgccgtttggtatcgatggtgtggtaatcaaa
gtggataatctggcacaacaggaacaactgggttatgtggcgcgggcaccaaggtttgcc
attgcgcagaaatttccggctgaggaaatgctcaccacagttgaagcaattgatgtacag
gttggacgtactggtgcaattaccccggtagcgcgtttaacgccggtatttgttggcggt
gtaactgtcaccaatgccactttgcataacgaaggtgaagcacagcgtaaggatgtacgt
gagggtgataccgtcattgtacggcgtgccggtgatgtgattccggaaattgtgtctgtg
gtactggcacagcgaccaatggtggaagagaagacagatttgctcacgccggcacaggcc
gtacccaaatttccgcctttccgtatgccgcaacattgtccggtttgtggacatgagatt
gtgcgtgaagagggggaggctgtggtgcgctgtagtggtggtatgctatgtcaggcacaa
cgggtgcaggcactgattcactttgcatcacgccgagcgatggatattgaaaatctgggc
gaacggcagattgagctgttggtagcacagggacgtgtgcatcattttgccgatgtgtac
cgtttgcaactggctgatttgctggctatgaaacagcaggccaaacaggaagcagcggat
agtgcagaagcagcggcggatgaactggccttagccactaccggtaaggcggccaaacag
caaccttctcgctgggcagaaaatattctggccggcatcgaagccagccgccagtgtccg
ctggccaatcttatctatgctttaggtatttttcatgtgggtgaacgcactgccaagcaa
ttagcacaggcgtttggcgatttgtccacgctaactcaggctactgaaccattgctggcc
tgtttgccggatatcggtactgttgtggcgcattcggtagcgtattttttcagtcaggaa
gatcagacaggtcaattgcaggaattgcttgatgcgggcgtagaaccacaggcagaaacc
cgccggataccgctgcgtgaatattttacccctgagcgggtactggcacgtctgcccggt
gccggcttaaccgaaacccgagcacagaagctgtggcaactggtggggatggactggtcg
cagctattaacagataaagctttaccggaaagctggcaacactggtgcgcccagccggaa
aaccgcttattactgcaaaaaaccattgctttacgtgagcaattacttgccggtgagcca
gaagaaatagcgccgacagccaatgaagctgttgccggtaagacttttgtgttgaccggc
acattaccagactggtcgcgggatgtggcgcagcagcacatcgaggaagctggtggcaaa
gtcagtagcagtgtgtcgaaaaaaaccgattttgtcgtggctggtgctgaagcaggcagc
aaattgagcaaagccgaggcgctgggtgttaccatactggaccaggctgcgttgatggct
atgttaggaattaaagaatag
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