Sulfidibacter corallicola: J3U87_15095
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Entry
J3U87_15095 CDS
T07864
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scor
Sulfidibacter corallicola
Pathway
scor03030
DNA replication
scor03410
Base excision repair
scor03420
Nucleotide excision repair
scor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J3U87_15095 (ligA)
03410 Base excision repair
J3U87_15095 (ligA)
03420 Nucleotide excision repair
J3U87_15095 (ligA)
03430 Mismatch repair
J3U87_15095 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scor03032
]
J3U87_15095 (ligA)
03400 DNA repair and recombination proteins [BR:
scor03400
]
J3U87_15095 (ligA)
Enzymes [BR:
scor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J3U87_15095 (ligA)
DNA replication proteins [BR:
scor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J3U87_15095 (ligA)
DNA repair and recombination proteins [BR:
scor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J3U87_15095 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J3U87_15095 (ligA)
MMR (mismatch excision repair)
DNA ligase
J3U87_15095 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J3U87_15095 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
Nlig-Ia
GFRP
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
QTD53774
UniProt:
A0A8A4TXD5
LinkDB
All DBs
Position
complement(5029292..5031328)
Genome browser
AA seq
678 aa
AA seq
DB search
MSQDASKPGKINADQAAARMDELIEQIEYHRRRYYLDHDPEISDAEYDGLERELTDLERN
FAKLVRPHSPSFRVGGGLADDHPEAAHRVAMLSLENSYNSADLAQYFERCVKAAGHELNY
SAELKIDGVSLSLTYSHGVLSRAVTRGDGKVGEEVTLNAKTIRGLPLRVSEWEAHEYMEV
RGEVYIDRGDFAAINEARLAENLPLFANPRNSAAGSMRLLDSREAAKRHLRIFVYQALGP
WAESINSHVAALQGLHDLGFPVNPLNTSITDHAQLETLIEDWSARRDDLGYDTDGIVLKV
DDTGLYDTIGYTTKFPKWATAFKFPAEQATTKILDISIQVGRTGVLTPVAHFEPVGLAGT
TVARATLHNFDEIAKKDIRVGDWVFIEKGGDIIPKVVKVITARREEGVVPYQLPDQCPSC
GTPPAKVADQVALRCENLSCPAQLERRIMHFASRNAMDIQGLGKERVQQMVELKLLTDLA
SIYRLDEEQLWKLERVGTKWIRNLLGEIEKSKQQPFARVLFAVGIPMIGEKVAELLIDVF
PGYEALLAAEVEQLADIHGIGEKVARSLSDHLRMDSYRQTFAAFGELGLKLVAEGDRDRG
GEQALTGKTVVVTGSFDGFSRKEATDLLKQHGAKVTSSVTKKTDLLVCGEKPGSKLDKAQ
ALGVKVVGEEWLNQWQNT
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaggatgcctccaagcccggaaaaatcaacgccgatcaagccgccgcgcgcatg
gacgagctgatcgaacaaatcgagtatcaccgccgtcgctactacctggatcacgatccc
gagatcagcgatgcggagtacgacgggctggaacgcgaactgaccgacctggaacgcaac
ttcgccaaattggtgcgaccccattcgccttcgtttcgcgtcggtggcggcttggccgac
gaccaccccgaggccgcccaccgcgtggcgatgctgtctctggagaactcatacaacagc
gccgacctggcccaatatttcgaacgctgcgtcaaggcggccggtcacgagctcaactat
tcggccgagctgaagatcgacggcgtctcgctcagcctcacctacagccacggcgtgctg
tcccgggccgtcacccgcggcgacggcaaggtcggtgaagaagtgacgctcaacgccaag
accattcgaggcctgcccctgcgcgtctccgagtgggaggcccacgagtacatggaagtg
cgcggcgaggtctacatcgatcgcggcgattttgccgccatcaacgaggcccgcctggcc
gagaacctgccgttgttcgccaacccgcgcaattcggcggccggctcgatgcgccttctg
gattcccgcgaagccgccaaacgccacctgcgcatcttcgtctaccaggccctgggaccc
tgggccgaatcgatcaattcccacgtggccgcgctccaaggcctccacgacctgggattc
cccgtcaacccgctcaacacgtcgattaccgaccacgcgcaactggaaaccctgatcgag
gattggtcggcacgccgcgacgatctcggctacgacaccgacggcatcgtgttgaaagtg
gacgacaccggcctgtacgacaccatcggctacaccaccaaattcccgaaatgggccacg
gcgttcaaattccccgcggaacaggccaccaccaagatcttggacatcagcattcaggtc
ggccgcaccggggtactcacgccggtcgcccacttcgaaccggtcggtctggccggcacc
acggtggctcgcgccaccctgcacaacttcgacgaaatcgccaaaaaggacatccgcgtc
ggcgattgggtcttcatcgaaaagggtggggacatcatccccaaggtggtcaaggtcatc
accgcacgccgcgaagaaggcgtggtcccctaccaactgcccgatcaatgcccgagctgc
ggtaccccgcccgccaaggtcgcggatcaggtggcgctgcgctgtgagaacctgtcctgt
ccggctcaactggaacgccgcatcatgcacttcgcctcgcgcaacgccatggacattcaa
gggttgggcaaggaacgcgtgcagcagatggtggaactgaagctgctcaccgatctggcc
tcgatctatcgcctggacgaggaacaactctggaaactggagcgagtgggcaccaaatgg
attcgcaacctgctcggcgaaatcgaaaaatccaagcagcaacccttcgcacgcgtcctg
ttcgccgtcgggattccgatgatcggcgaaaaggtcgccgaattgctgatcgacgtgttt
cccggttacgaggccctgctcgcggccgaggtggaacaactcgccgacattcacggtatc
ggcgagaaggtggcccgcagcctcagcgatcacttgcgcatggacagctaccgccagacc
ttcgcggccttcggtgaactgggcctgaaactggtggcggaaggcgatcgcgatcgcggc
ggcgagcaggccctgaccggcaagacggtcgtggtcaccggcagcttcgacggcttcagc
cgcaaggaagcgaccgacctcctcaaacagcacggcgccaaggtgacctccagtgtcacc
aagaaaaccgacctgctggtttgcggcgagaagcccggttccaaattggacaaggcccag
gccctgggcgtgaaagtggttggagaggagtggctgaaccaatggcaaaacacctga
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