Spiroplasma culicicola: SCULI_v1c01280
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Entry
SCULI_v1c01280 CDS
T03047
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scq
Spiroplasma culicicola
Pathway
scq03030
DNA replication
scq03410
Base excision repair
scq03420
Nucleotide excision repair
scq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCULI_v1c01280 (ligA)
03410 Base excision repair
SCULI_v1c01280 (ligA)
03420 Nucleotide excision repair
SCULI_v1c01280 (ligA)
03430 Mismatch repair
SCULI_v1c01280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scq03032
]
SCULI_v1c01280 (ligA)
03400 DNA repair and recombination proteins [BR:
scq03400
]
SCULI_v1c01280 (ligA)
Enzymes [BR:
scq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCULI_v1c01280 (ligA)
DNA replication proteins [BR:
scq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCULI_v1c01280 (ligA)
DNA repair and recombination proteins [BR:
scq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCULI_v1c01280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCULI_v1c01280 (ligA)
MMR (mismatch excision repair)
DNA ligase
SCULI_v1c01280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCULI_v1c01280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
Nlig-Ia
5_3_exonuc
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AHI52469
UniProt:
W6AFK0
LinkDB
All DBs
Position
138807..140813
Genome browser
AA seq
668 aa
AA seq
DB search
MTELKKHIEEIKEKLHQWSHAYYVLDKPMVDDLEYDSLLKELIKIETQNPQLITSDSPTQ
KVGGIVLDKFEKYQHKTPMLSLSNAFNDEDLKNFNDQIYKEMENNNYSFFVEPKIDGLSI
SLIYSNGILSKAVTRGDGVFGEDVTVNVKTIKSIPLKIANQLDYCEVRGEVFLSKKEFDK
INHQRSLNGEELFANPRNAAAGTLRQLDSNIAASRNLDAFLYYYMDRETIATHSESMRYL
DSMKFKINSLGKHCTNIEEVIEHIHYISEQRSELDYEIDGVVVKVDEFDLYEKVGYTSKF
PKWAIAYKFPAEIKTTKLLNIFPTVGRTGRITYNAALEPVQLAGTTVQAATLHNADFIID
RDIRVGAVVKVKKAGDIIPEVIEPIIDKDFDTLEKFQEATHCPECNFILERFEDEVDQYC
PNKECPRKIIRAIEHFVSRDAMNIEGLSIKIIEKLFANNFVKEIKDIFNLKNFKEQLIQL
DKMGEKSVTNLLEAIEKSKLNSAEKLFFGLGIRHVGKKTAQLLITKYKNILDLKDIDWND
LEEIHDIGPTVTKSITKWFSDKTNIEMLHTLEEQGVNLKYLGQIGTKFSDSITNKNFVIT
GTLSKPRNHFKTILEEYGAKVIDSVSKKTDYLLAGSEAGSKLEKAQKLNVTIIDEQEFNN
LIGGKNEN
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgactgaactaaaaaaacacattgaagaaattaaagaaaaattacatcaatgatctcat
gcatattatgttttagataaaccaatggttgatgatttagagtatgactcattgttaaaa
gaattaattaaaattgaaactcaaaatccacaattaattacgtcagattcgccaactcaa
aaagttgggggtattgttttagataaatttgaaaaatatcaacataaaactccaatgtta
agtttgtcaaatgcttttaatgatgaagatttaaaaaattttaatgatcaaatttataaa
gaaatggaaaataataattattcttttttcgttgaaccaaaaattgatgggctttcaatc
tctttaatttatagtaatggaattttatcaaaagctgttactaggggagatggagttttt
ggagaagacgtaactgttaatgttaaaactattaaatctattcctttaaaaattgccaat
caattagattattgtgaagttaggggagaagtttttttatctaaaaaggaatttgataaa
attaatcatcagcgttcattaaatggagaagagttatttgcaaatccaagaaacgcagct
gctggaactttaagacaacttgactcaaacattgcagcttcaagaaatctagatgctttc
ttgtattactatatggatcgcgaaacaattgcaactcacagtgaatcaatgagatattta
gattcaatgaagtttaaaattaattcccttggtaaacattgtactaatattgaagaagtg
attgaacatattcattatattagtgaacaaagaagtgaattagattatgaaattgatgga
gttgttgttaaagtggatgaatttgatttatatgaaaaagtaggttacacttcaaaattc
ccaaaatgagcaattgcctataaattcccagcagaaataaaaactacaaagttattaaat
atttttccaactgttggaagaactggaagaataacttataatgccgcacttgaaccagtc
caacttgctggaacaactgttcaagcagctacacttcataatgcagactttataattgat
cgcgatattagagtcggtgctgttgtcaaagttaaaaaagcaggagatattattcctgaa
gtgattgaaccaattattgataaagattttgatacattagaaaaatttcaagaagcaact
cattgtcctgaatgtaattttattttagaaagatttgaagatgaagtagatcaatattgt
ccaaataaagagtgtccaagaaaaattattagagcaattgaacattttgtatcacgtgat
gctatgaatattgaaggactaagtataaaaattattgaaaaattatttgccaataatttt
gtaaaagaaattaaagatatttttaatttaaaaaattttaaagaacaattaattcaactt
gataagatgggagaaaaatctgttactaatttattagaagcaattgaaaaatcaaaatta
aactcagctgaaaaattattttttggtttaggaattagacatgttggtaaaaaaactgca
caacttttaattactaaatataaaaatattttagatttaaaagatattgattgaaacgat
ttagaagagattcacgatattggaccaactgttactaaatcaattacaaaatgatttagt
gataaaacaaatattgaaatgttacatacgcttgaagaacaaggagttaatttaaaatat
ttaggacaaattggaacaaagtttagtgatagtattacaaataaaaattttgtaatcact
ggaacactttcaaaaccaagaaatcattttaaaactattttagaagagtatggtgcaaaa
gttattgatagtgtaagtaaaaaaacagattatttattagcaggaagtgaagctggaagt
aaattggaaaaagctcaaaaattaaatgtaacaattattgatgaacaagaatttaataat
ctaattggaggtaaaaatgaaaattaa
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