Stanieria cyanosphaera: Sta7437_4333
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Entry
Sta7437_4333 CDS
T02406
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scs
Stanieria cyanosphaera
Pathway
scs03030
DNA replication
scs03410
Base excision repair
scs03420
Nucleotide excision repair
scs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sta7437_4333
03410 Base excision repair
Sta7437_4333
03420 Nucleotide excision repair
Sta7437_4333
03430 Mismatch repair
Sta7437_4333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scs03032
]
Sta7437_4333
03400 DNA repair and recombination proteins [BR:
scs03400
]
Sta7437_4333
Enzymes [BR:
scs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sta7437_4333
DNA replication proteins [BR:
scs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sta7437_4333
DNA repair and recombination proteins [BR:
scs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sta7437_4333
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sta7437_4333
MMR (mismatch excision repair)
DNA ligase
Sta7437_4333
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sta7437_4333
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
HHH_3
STE
Motif
Other DBs
NCBI-ProteinID:
AFZ37802
UniProt:
K9Y1E9
LinkDB
All DBs
Position
4863053..4865083
Genome browser
AA seq
676 aa
AA seq
DB search
MTATPEIQQKVVQLKQQLIQAGYAYYVLDNPIMEDAVYDQLYRQLQDLETQYPELITPDS
PTQRVGDQPASQFTSVKHNIPLYSLENAFNQQELAKWQERWQRQAPDVQDFAYVCELKID
GSALALTYENGILVRGVTRGDGVTGEDITQNIRTIRTIPLRLNLDNPPSIVEVRGEAFLP
IAVFEKINQEREQSGEALFANPRNAAAGTLRQLDAKVVDKRKLNFFAYTLHLPNHPNHPT
SQWESLELLQKMGFRVNPNRKLCKSLAEVEEYYQEWDTARRNLSYLTDGVVVKLNSYSLQ
QRLGFTQKFPRWAIALKYPAEEAPTIVKDIIVNVGRTGAVTPMAVMQPVQLAGTTVQRAT
LHNSDRVSELDLRIGDTVIIRKAGEIIPEVVRVMSQLRPPDTQPYQMPTHCPECNSQLIR
PKGEAVTRCVNSSCPAILRGSLIHWASRDALDIRGLGEKIVVLLIKQNLVKSIADLYSLE
IEQIAALERMGQKSAQKLLKAIADSKNQPYARVLYGLGIRYVGSVNAKLLAQNFPTIETL
STASVASLEAVYGIGEEIAQSVFQWFRIPANQLLVSALQKAGLQFKHHNSSSKTQSNLTA
NTFTGKTFVITGTLTTLKRNEAKDLIEQAGGKVTNSISNKTDYLVIGENPGSKLAKAQEL
NIPQLDENQLLELLKT
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
gtgacagcaacaccagaaattcaacaaaaagtagttcaactgaaacaacaattaattcaa
gcaggatatgcttattatgtcctggacaatccgattatggaggatgctgtctatgatcaa
ctctatcgtcaattacaagatttagaaactcaatatccagaactaattactcctgatagc
ccaactcaacgagttggagatcaacccgcttcgcaatttacttcagttaaacacaatatt
cctctctatagtttagaaaatgcttttaatcagcaagaattagccaaatggcaagaaaga
tggcaacgacaagcaccagatgttcaggattttgcctatgtgtgtgagttaaaaattgat
ggctctgctttggctttaacttatgaaaatggcattttagttcgaggcgttactagagga
gatggagtgacaggggaagatattactcagaatatccgtactattagaactattcccttg
cgactcaatttagataacccaccctctatagtagaagtaaggggagaagcttttttaccc
atcgcagtttttgaaaaaattaatcaagagcgggaacaatctggagaagctttatttgct
aatcctcgtaatgctgctgctggtactttacgacagttggatgctaaagtcgtcgataaa
cgtaaattgaatttttttgcttatactttgcatcttcccaatcatccgaatcatcctact
tctcaatgggaatctttagagttattacaaaaaatgggatttcgggtaaatcctaaccgt
aaattgtgtaagtctctagcagaagtagaagaatattatcaagaatgggatacagctaga
cgtaatctttcttatttaaccgatggagtcgtcgtcaaactcaatagttactctctacaa
caaagattaggttttactcaaaaatttcctcgttgggcgatcgcacttaagtatccagcc
gaagaagctcctactatagttaaggatatcattgtcaatgtcggtagaactggcgcagta
accccaatggctgtgatgcaaccagttcaactagcaggaactaccgtacaaagggcaact
cttcacaatagcgatcgcgtttctgaattagatctccgtattggcgatacggtaattatc
cgtaaagcaggggaaattattcctgaagtagtaagggtaatgtctcaattgcgccctcct
gatacgcaaccctaccaaatgcctactcattgtcccgaatgtaattctcaattaattcgt
ccgaagggagaagcagtaactagatgtgtcaatagttcttgtccagctattttacgaggg
agtctaattcattgggcttcccgtgatgctttagatattaggggtttgggagaaaaaatt
gttgtccttctcataaaacaaaacctagtcaaatctattgccgatctttactctttggaa
atagaacaaattgctgcattagaaagaatgggacaaaaatccgcccagaaattgcttaaa
gcgatcgctgattctaaaaatcaaccctatgctagagttttatacggtttaggaattcgc
tatgttggtagcgttaatgccaaattattagctcaaaactttcccaccattgaaacctta
tccaccgcatctgtagcatctttggaagcagtttatggaataggagaagagattgctcaa
tcagttttccaatggtttagaattcctgctaatcaacttttagtatcagctttacaaaaa
gcaggattgcaatttaaacaccataattcttcgagcaagactcaatctaatctaactgca
aatacttttactggtaaaacttttgtcattactggtactttaaccacccttaaacgtaat
gaagccaaagatttaatcgaacaagcaggaggaaaagtaactaattcaattagtaataaa
actgactatttagtaataggagaaaatccaggttctaaattagctaaagcccaagaactt
aatattcctcaacttgatgaaaatcaacttttagagttacttaaaacttaa
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