Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCAT_4325
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Entry
SCAT_4325 CDS
T01646
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sct
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Pathway
sct03030
DNA replication
sct03410
Base excision repair
sct03420
Nucleotide excision repair
sct03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCAT_4325 (ligA)
03410 Base excision repair
SCAT_4325 (ligA)
03420 Nucleotide excision repair
SCAT_4325 (ligA)
03430 Mismatch repair
SCAT_4325 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sct03032
]
SCAT_4325 (ligA)
03400 DNA repair and recombination proteins [BR:
sct03400
]
SCAT_4325 (ligA)
Enzymes [BR:
sct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCAT_4325 (ligA)
DNA replication proteins [BR:
sct03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCAT_4325 (ligA)
DNA repair and recombination proteins [BR:
sct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCAT_4325 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCAT_4325 (ligA)
MMR (mismatch excision repair)
DNA ligase
SCAT_4325 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCAT_4325 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
MutL
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
CCB77021
UniProt:
F8JRH3
LinkDB
All DBs
Position
4629290..4631449
Genome browser
AA seq
719 aa
AA seq
DB search
MDIPAEARERHALLAEQVEEHRFRYYVKDAPVISDADFDTLLRSLEALEEEYPQLRTPDS
PTQKVAGSYETEFTSVQHRERMLSLDNAFAPEELDAWAERIAADLGGVPYHFLCELKVDG
LAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDRVPELVEVRGEVYFPM
ARFEELNARLVEAGEKPFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGARRGFDIDRQ
SHAYELLHEWGLPTAAHFKVVDGIAAVKEYIAYYGDNRHSVEHEIDGVVVKLDEVPLQGR
LGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFATLH
NQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSVCPECGTALQPMK
EGDVDLRCPNARACPAQLRERIYYLAGRRCLDIENFGYVAAAALTQPLEPAEPPLRDEGD
LFDLTVEQLLPIKSYVLDPDSGLPKRDPATGEEKVVTFFANAKGEPKKNTLAMLENIAAA
RQRPLARVITGLSIRHVGPVAAEALAREFRDLDRIAAADEAELAAVEGVGPTIAASVKQW
FAEEWHREIIEKWRAAGVRFTEEGSDSGPRPLQGLTVVVTGTLQAYTRDGAKEALTTAGA
KVTGSVSKKTDFVVVGDNPGSKYDKAVQLKVPVLDEAGFDVLLTRGADAAREAAVDTSA
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
gtggacatccctgccgaagcgcgcgaacgccacgcactgctggccgaacaggtggaggag
caccgcttccggtactacgtgaaggacgcgccggtcatcagcgacgccgacttcgacacg
ctgctcaggtcgctggaggcgctggaggaggagtacccgcagctgcgcaccccggactcg
cccacccagaaggtcgccgggtcctacgagacggagttcacctccgtccagcaccgggag
cggatgctctccctggacaacgccttcgcccccgaggagctggacgcctgggccgagcgg
atcgccgccgacctcggcggcgtcccgtaccacttcctgtgcgagctgaaggtggacggc
ctcgcggtcaacctcacctacgagcacggccggctcacccgggccgccacccgcggcgac
ggccgcaccggcgaggacatcacccccaacgtccgcaccatcgccgagatcccggaccgg
ctcaccggcgaccgggtgcccgagctggtcgaggtgcgcggcgaggtctacttcccgatg
gcccggttcgaggagctcaacgcgcggctggtggaggccggggagaagccgttcgccaac
ccccgcaacgccgccgccggttcactgcgccagaaggacccccgggtcaccgcctcccgt
ccgctgcacatggtggtgcacggcatcggcgcccgccgcggcttcgacatcgaccgccag
tcgcacgcctacgagctgctccacgagtgggggctgccgaccgccgcccacttcaaggtg
gtcgacggcatcgccgcggtcaaggagtacatcgcctactacggcgacaaccgccactcg
gtggagcacgagatcgacggcgtggtggtcaagctcgacgaggtcccgctccagggccgg
ctgggctccacctcccgcgccccgcgctgggccatcgcctggaagtacccgccggaggag
gtcaacaccaagctggtcgacatccgggtcggcgtcggccgcaccggccgggtcaccccg
tacgcccaggtggagccggtcacggtggccggttccgaggtggagttcgccaccttgcac
aaccaggacgtggtcaaggccaagggcgtcctcatcggcgacaccgtggtgctgcgcaag
gccggtgacgtcatcccggagatcctcggccccgtcgccgacctgcgggacggcagcgag
cgcgagttcgtcatgccctcggtctgccccgagtgcggcaccgcgctccagccgatgaag
gagggcgacgtcgatctgcgctgccccaacgcccgtgcctgcccggcccagttgcgggaa
cgcatctactacctggccggccggcgctgcctggacatcgagaacttcgggtacgtggcc
gccgcggcgctcacccagccgctggagccggccgagccgccgctgcgcgacgagggcgac
ctgttcgacctgacggtggagcagctgctgcccatcaagtcgtacgtcctcgaccccgac
agcgggctgcccaagcgggatccggccaccggcgaggagaaggtggtcaccttcttcgcc
aacgccaagggcgagccgaagaagaacaccctggccatgctggagaacatcgccgccgcc
cggcagcgcccgctggcccgcgtcatcaccgggctctccatccgccacgtcggcccggtc
gccgccgaggcgctggcccgcgagttccgcgacctggaccgcatcgccgccgccgacgag
gccgagctggccgcggtggaaggggtcggccccaccatcgccgcctcggtcaagcagtgg
ttcgccgaggagtggcaccgcgagatcatcgagaagtggcgggccgccggcgtccgtttc
accgaggagggctccgactccggcccccgtccgctgcaagggctcaccgtcgtcgtcacc
ggcaccctccaggcatacacccgggatggcgcgaaagaagcgctgaccacagcaggtgcg
aaggtcaccggatcggtttcgaagaagaccgacttcgtggtcgtcggtgacaaccccggt
tccaaatacgacaaggcggtgcagctcaaggtgcccgtgctcgacgaggccgggttcgac
gtgctgctgacgcgcggtgcggacgccgcacgggaggccgccgtcgacacctccgcctga
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