Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488: SCATT_43100
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Entry
SCATT_43100 CDS
T02095
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scy
Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488
Pathway
scy03030
DNA replication
scy03410
Base excision repair
scy03420
Nucleotide excision repair
scy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCATT_43100
03410 Base excision repair
SCATT_43100
03420 Nucleotide excision repair
SCATT_43100
03430 Mismatch repair
SCATT_43100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scy03032
]
SCATT_43100
03400 DNA repair and recombination proteins [BR:
scy03400
]
SCATT_43100
Enzymes [BR:
scy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCATT_43100
DNA replication proteins [BR:
scy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCATT_43100
DNA repair and recombination proteins [BR:
scy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCATT_43100
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCATT_43100
MMR (mismatch excision repair)
DNA ligase
SCATT_43100
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCATT_43100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
MutL
Motif
Other DBs
NCBI-ProteinID:
AEW96681
UniProt:
F8JRH3
LinkDB
All DBs
Position
4629098..4631257
Genome browser
AA seq
719 aa
AA seq
DB search
MDIPAEARERHALLAEQVEEHRFRYYVKDAPVISDADFDTLLRSLEALEEEYPQLRTPDS
PTQKVAGSYETEFTSVQHRERMLSLDNAFAPEELDAWAERIAADLGGVPYHFLCELKVDG
LAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDRVPELVEVRGEVYFPM
ARFEELNARLVEAGEKPFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGARRGFDIDRQ
SHAYELLHEWGLPTAAHFKVVDGIAAVKEYIAYYGDNRHSVEHEIDGVVVKLDEVPLQGR
LGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEVEFATLH
NQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSVCPECGTALQPMK
EGDVDLRCPNARACPAQLRERIYYLAGRRCLDIENFGYVAAAALTQPLEPAEPPLRDEGD
LFDLTVEQLLPIKSYVLDPDSGLPKRDPATGEEKVVTFFANAKGEPKKNTLAMLENIAAA
RQRPLARVITGLSIRHVGPVAAEALAREFRDLDRIAAADEAELAAVEGVGPTIAASVKQW
FAEEWHREIIEKWRAAGVRFTEEGSDSGPRPLQGLTVVVTGTLQAYTRDGAKEALTTAGA
KVTGSVSKKTDFVVVGDNPGSKYDKAVQLKVPVLDEAGFDVLLTRGADAAREAAVDTSA
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
gtggacatccctgccgaagcgcgcgaacgccacgcactgctggccgaacaggtggaggag
caccgcttccggtactacgtgaaggacgcgccggtcatcagcgacgccgacttcgacacg
ctgctcaggtcgctggaggcgctggaggaggagtacccgcagctgcgcaccccggactcg
cccacccagaaggtcgccgggtcctacgagacggagttcacctccgtccagcaccgggag
cggatgctctccctggacaacgccttcgcccccgaggagctggacgcctgggccgagcgg
atcgccgccgacctcggcggcgtcccgtaccacttcctgtgcgagctgaaggtggacggc
ctcgcggtcaacctcacctacgagcacggccggctcacccgggccgccacccgcggcgac
ggccgcaccggcgaggacatcacccccaacgtccgcaccatcgccgagatcccggaccgg
ctcaccggcgaccgggtgcccgagctggtcgaggtgcgcggcgaggtctacttcccgatg
gcccggttcgaggagctcaacgcgcggctggtggaggccggggagaagccgttcgccaac
ccccgcaacgccgccgccggttcactgcgccagaaggacccccgggtcaccgcctcccgt
ccgctgcacatggtggtgcacggcatcggcgcccgccgcggcttcgacatcgaccgccag
tcgcacgcctacgagctgctccacgagtgggggctgccgaccgccgcccacttcaaggtg
gtcgacggcatcgccgcggtcaaggagtacatcgcctactacggcgacaaccgccactcg
gtggagcacgagatcgacggcgtggtggtcaagctcgacgaggtcccgctccagggccgg
ctgggctccacctcccgcgccccgcgctgggccatcgcctggaagtacccgccggaggag
gtcaacaccaagctggtcgacatccgggtcggcgtcggccgcaccggccgggtcaccccg
tacgcccaggtggagccggtcacggtggccggttccgaggtggagttcgccaccttgcac
aaccaggacgtggtcaaggccaagggcgtcctcatcggcgacaccgtggtgctgcgcaag
gccggtgacgtcatcccggagatcctcggccccgtcgccgacctgcgggacggcagcgag
cgcgagttcgtcatgccctcggtctgccccgagtgcggcaccgcgctccagccgatgaag
gagggcgacgtcgatctgcgctgccccaacgcccgtgcctgcccggcccagttgcgggaa
cgcatctactacctggccggccggcgctgcctggacatcgagaacttcgggtacgtggcc
gccgcggcgctcacccagccgctggagccggccgagccgccgctgcgcgacgagggcgac
ctgttcgacctgacggtggagcagctgctgcccatcaagtcgtacgtcctcgaccccgac
agcgggctgcccaagcgggatccggccaccggcgaggagaaggtggtcaccttcttcgcc
aacgccaagggcgagccgaagaagaacaccctggccatgctggagaacatcgccgccgcc
cggcagcgcccgctggcccgcgtcatcaccgggctctccatccgccacgtcggcccggtc
gccgccgaggcgctggcccgcgagttccgcgacctggaccgcatcgccgccgccgacgag
gccgagctggccgcggtggaaggggtcggccccaccatcgccgcctcggtcaagcagtgg
ttcgccgaggagtggcaccgcgagatcatcgagaagtggcgggccgccggcgtccgtttc
accgaggagggctccgactccggcccccgtccgctgcaagggctcaccgtcgtcgtcacc
ggcaccctccaggcatacacccgggatggcgcgaaagaagcgctgaccacagcaggtgcg
aaggtcaccggatcggtttcgaagaagaccgacttcgtggtcgtcggtgacaaccccggt
tccaaatacgacaaggcggtgcagctcaaggtgcccgtgctcgacgaggccgggttcgac
gtgctgctgacgcgcggtgcggacgccgcacgggaggccgccgtcgacacctccgcctga
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