Streptomyces cyaneochromogenes: EJ357_42700
Help
Entry
EJ357_42700 CDS
T06811
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scya
Streptomyces cyaneochromogenes
Pathway
scya03030
DNA replication
scya03410
Base excision repair
scya03420
Nucleotide excision repair
scya03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJ357_42700 (ligA)
03410 Base excision repair
EJ357_42700 (ligA)
03420 Nucleotide excision repair
EJ357_42700 (ligA)
03430 Mismatch repair
EJ357_42700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scya03032
]
EJ357_42700 (ligA)
03400 DNA repair and recombination proteins [BR:
scya03400
]
EJ357_42700 (ligA)
Enzymes [BR:
scya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EJ357_42700 (ligA)
DNA replication proteins [BR:
scya03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EJ357_42700 (ligA)
DNA repair and recombination proteins [BR:
scya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EJ357_42700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EJ357_42700 (ligA)
MMR (mismatch excision repair)
DNA ligase
EJ357_42700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EJ357_42700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AZQ40876
UniProt:
A0A3Q9F206
LinkDB
All DBs
Position
complement(9505546..9507711)
Genome browser
AA seq
721 aa
AA seq
DB search
MTGAVESERPATGALSVVAGRMAGMTTPVAEIVDAAAYTQAVEDAVKAAAAYYAGGTSPL
DDETYDRLVRGIAAWEHEHPDDVLPDSPTGKVAGGAVEGDVPHTVAMLSLDNVFSPEEFT
AWTTSLSRRIGRDVTRFSVEPKLDGLAIAARYTDGHLRQLITRGDGTAGEDVSHAIGTIE
GLPEKLTEPVTVEVRGEVLMTTAQFEHANEVRTAHGGQPFANPRNAAAGTLRAKDREYTV
PMTLFGYGLLPVAGTEAAPAARLGELPHSDLMAQTAAYGVNTTATTAVPGITADTTEQVL
TRIEEIAALRAQLPFGIDGIVIKADLAADQKAAGSGTRAPRWAIAYKLAAVEKITRLLEV
EWNVGRTGIIAPRAVLEPVEIDGSTITYATLHNPADITRRDLRLGDHVMVYRAGDVIPRV
EAPVAHLRTGAEQPIVFPEACPRCGSGIDASEQRWRCENGRNCHLVASLSYAAGRDQLDI
EGLGHTRVVQLVEAGLVADLADLFTLTREQFLGLERMGETSTDNLLAALATARTRPLSRV
LCALGVRGTGRSMSRRIARYFATMDAIRAADAETMQQVDGIGTEKAPSIVAELAELAPLI
DKLAAAGVNMIEPGATPPSPTVGDAPADDSPAAADAPDMPLAGMTVVVTGAMTGALEKLS
RNQMNELIERAGGRSSSSVSKKTTLVVAGEGAGSKRAKAETLGIRLATPDEFAALIADFV
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atcacgggggccgtggagagcgaacgacctgccacaggggcgttgtcagtggtggcaggc
aggatggcaggcatgacgacaccagttgcagagatcgtggatgccgccgcctacacgcag
gcggtcgaggacgcggtgaaggccgcggccgcctactacgccggcggcacgtcgcctctg
gacgacgagacctacgaccggctggtgcgcggcatagctgcctgggagcacgagcacccc
gatgacgtgctgcccgactcgccgacggggaaggtggccggcggggccgtggagggcgat
gtcccgcacacggtggcgatgctgagcctggacaacgtgttctcgcccgaggagttcacc
gcctggaccacgtccctgtcccggcgcatcggccgcgacgtcacccgcttcagtgtcgag
ccgaaactcgacggactcgcgatcgccgcccgctacacggacggccacctgagacaactg
atcacccgcggcgacgggacggccggggaggacgtctcgcacgcgatcggcaccatcgag
ggcctgcccgagaaactcaccgagccggtcactgtggaggtgcgcggtgaagtcctgatg
acgacagctcagttcgagcacgccaatgaggtgcgcaccgcgcacggcggccagccgttc
gccaatccgcgcaatgccgcggcgggcaccctgcgcgccaaggaccgcgagtacaccgtg
ccgatgacgctcttcggctacggcctgctgcccgttgccggcaccgaggcggcgccggcg
gcccggctgggcgagctcccgcacagcgatctcatggcgcagacggccgcgtacggggtg
aacaccaccgccaccaccgccgtgcccggcatcaccgccgacaccaccgagcaggtgctg
acccggatagaggagatcgcggcgctgcgcgcacagttgccgttcggcatcgacgggatc
gtcatcaaggccgacctggccgccgaccagaaggccgccggttccggtacgcgcgccccg
cgctgggcgatcgcctacaagctggcggccgtcgagaagatcacccggctgctcgaggtg
gagtggaacgtgggccgcaccggcatcatcgccccgcgcgcggtccttgagccggtcgag
atcgacggctccaccatcacctacgcgaccttgcacaacccggccgacatcacccgccgc
gacctgcgcctgggcgaccacgtcatggtgtaccgcgccggtgacgtcatcccccgcgtc
gaagcccccgtcgcccacctgcgcaccggagccgaacagcccatcgtcttccccgaggcg
tgcccgcggtgcggctccggcatcgacgccagcgagcagcgctggcgctgcgagaacggc
cgcaactgccacctggtggcctccctctcctacgccgcgggccgcgaccagctcgacatc
gaaggcctcggccacacccgcgtcgtccaactcgtggaggccggcctggtcgccgacctg
gccgacctgttcaccctcacccgcgagcagttcctgggcctggaacggatgggcgagacc
agcaccgacaacctcctcgccgccctcgccaccgccaggacccggcctctgtcacgagta
ctgtgcgcgctcggcgtgcgcggcaccggccggtccatgtcccgccgcatcgcccgctac
ttcgccaccatggacgccatccgcgccgccgacgccgaaaccatgcagcaggtcgacggc
atcggcaccgagaaagccccgtccatcgtcgccgaactcgccgaactcgccccgctcatc
gacaaactcgcggcagccggagtgaacatgatcgaacccggcgccaccccgccctccccc
acggtcggcgacgcacccgccgacgacagcccggcggccgccgacgcaccggacatgccc
ctggccgggatgacggtggtggtgaccggcgcgatgaccggagcgctggaaaagctcagc
cgcaaccagatgaacgagctcatcgagcgcgccggcggccgctcctcctccagcgtctcc
aagaagaccaccctggtagtggccggcgagggcgccgggtccaaacgcgccaaggccgaa
accctcggcatccgcctggccacaccggacgagttcgccgctctcatagctgacttcgtc
gactga
DBGET
integrated database retrieval system
