Streptomyces cyanogenus: S1361_27225
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Entry
S1361_27225 CDS
T07416
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scyg
Streptomyces cyanogenus
Pathway
scyg03030
DNA replication
scyg03410
Base excision repair
scyg03420
Nucleotide excision repair
scyg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
S1361_27225 (ligA)
03410 Base excision repair
S1361_27225 (ligA)
03420 Nucleotide excision repair
S1361_27225 (ligA)
03430 Mismatch repair
S1361_27225 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyg03032
]
S1361_27225 (ligA)
03400 DNA repair and recombination proteins [BR:
scyg03400
]
S1361_27225 (ligA)
Enzymes [BR:
scyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
S1361_27225 (ligA)
DNA replication proteins [BR:
scyg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
S1361_27225 (ligA)
DNA repair and recombination proteins [BR:
scyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
S1361_27225 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
S1361_27225 (ligA)
MMR (mismatch excision repair)
DNA ligase
S1361_27225 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
S1361_27225 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
MutL
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QTE01055
LinkDB
All DBs
Position
6020095..6022290
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQQAETAVPAEARDKHAQLAEQIEEHRFRYYVKDAPVISDAEFDALLKSLEALEEQ
YPELRTPDSPTQKVAGSYATEFTAVEHRERMLSLDNTFNDDELAAWAERIARELGDQTYH
FLCELKVDGLAVNLTYEKGRLTRAATRGDGRTGEDITPNVRTITEIPDRLAGDRVPDLVE
IRGEVYFPMEKFLELNERLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGYTGMTRLSQAYDLLKSWGLPTSPHNRVVDDLDGVRQFIAHYGENRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVQPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPGECP
ECGTPLRPMKEGDIDLRCPNARACPAQLRERVSYLAGRECLDIEHFGAVAAAALTRPLEP
ADPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPKTGEEKVVTVFANQKGEPKKNT
LALLANIEAAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATEAELAATDGVG
PIIAAALKEWFAEDWHREIVRKWKAAGVPLEDQSSGEEEGPRPLAGLTVVVTGTLENFTR
DGAKEALQGQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFNVLLEQGPE
AAAEVALPTGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcagcaggcggagacggcagtgcccgccgaggcacgtgacaagcat
gcgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcatcagcgacgcggagttcgacgcgctcctgaagtccctggaggccctggaggagcag
tatccggaactgcgcacgccggactcgcccacccagaaggtcgcggggtcgtacgcgacg
gagttcaccgcggtcgagcaccgcgagcggatgctctccctcgacaacacgttcaacgac
gatgagctggccgcatgggccgagcgcatcgcgcgcgaactcggcgaccagacgtaccac
ttcctgtgcgagctgaaggtcgacggtctcgccgtcaacctcacgtacgagaagggccgc
ctcacccgcgcggccacccgcggcgacggccgcaccggtgaggacatcacgccgaacgtc
cggacgatcacggagatcccggaccgcctggcgggcgacagggtgcccgacctggtggag
atccgcggcgaggtctacttcccgatggagaagttcctcgaactcaacgaacgcctggtc
gcggccggtgacaagcccttcgccaacccccgcaacgccgccgccggttcgctgcgccag
aaggacccgcgggtcaccgccacccgcccgttgcacatggtcgtccacggcatcggcgcc
ctggagggctacacgggcatgacccggctctcccaggcctacgacctgctgaagagctgg
ggcctgcccacctccccgcacaacagggtggtcgacgacctcgacggcgtgcggcagttc
atcgcccactacggcgagaaccgccactccgtcgagcacgagatcgacggtgtcgtggtc
aagctggacgagatccgcctccaggggcggctcggctccaccgcgcgtgcgccgcgctgg
gcgatcgcctacaagtacgcgccggaagaggtcaacaccaagctgatcgacatcaaggtg
ggcgtcggccgcacgggccgggtcacgccgtacgcccaggtccagccggtcacggtcgcg
ggcagcgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtc
ctcatcggcgacacggtcgtgctccgcaaggccggtgacgtcatcccggagatcctcggc
ccggtggtcgacctcagggacggcagcgagcgggagttcgtgatgccgggcgagtgcccc
gagtgcggcacaccgctgcggcccatgaaggagggcgacatcgacctgcgttgccccaac
gcccgcgcgtgcccggcccagttgcgggagcgggtctcctacctcgcgggccgggagtgc
ctggacatcgagcacttcggcgcggtggccgccgccgcgctcacccgcccgctggagccg
gccgacccgccgctcgtggacgagggcgacctgttcgacctgacggtggagaagctgctg
cccatcaaggcctatgtcctcgacccggacagcggactgcccaagcgcgacccgaagacc
ggcgaggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacacc
ctcgcgctgctggcgaacatcgaggcggccaagtcccgtccgctcgcccgcttcctgaac
gggctgtcgatccggcacgtgggcccggtcgccgcgcaggccctcgcgcgcgagttccgc
tccatcgaccgcatcgaacaggcgaccgaggcggagctggcggccaccgacggcgtcggc
ccgatcatcgccgccgcgctcaaggagtggttcgccgaggactggcaccgcgagatcgtc
cgcaagtggaaggccgccggggtcccgctggaggaccagtcctccggcgaggaggagggg
ccgcgtccgctggcggggctcacggtcgtcgtcaccggcacgctggagaacttcacccgg
gacggcgccaaggaggcgctgcagggccagggcgcgaaggtgaccggttcggtgtcgaag
aagacctcgttcgtcgtagtgggtgacaaccctggatcgaagtacgacaaggccatgcag
ctgaaggttcccgttctgaacgaggacggtttcaacgtcctgttggaacagggccccgag
gcggcggccgaagtcgcgcttccgaccggggagtag
DBGET
integrated database retrieval system
