Streptomyces cynarae: N8I84_27800
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Entry
N8I84_27800 CDS
T09435
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scyn
Streptomyces cynarae
Pathway
scyn03030
DNA replication
scyn03410
Base excision repair
scyn03420
Nucleotide excision repair
scyn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scyn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N8I84_27800 (ligA)
03410 Base excision repair
N8I84_27800 (ligA)
03420 Nucleotide excision repair
N8I84_27800 (ligA)
03430 Mismatch repair
N8I84_27800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyn03032
]
N8I84_27800 (ligA)
03400 DNA repair and recombination proteins [BR:
scyn03400
]
N8I84_27800 (ligA)
Enzymes [BR:
scyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N8I84_27800 (ligA)
DNA replication proteins [BR:
scyn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N8I84_27800 (ligA)
DNA repair and recombination proteins [BR:
scyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N8I84_27800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N8I84_27800 (ligA)
MMR (mismatch excision repair)
DNA ligase
N8I84_27800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N8I84_27800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
UXY22086
LinkDB
All DBs
Position
unmamed1:6094625..6096820
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTVPAEAREQHAQLAEQIEEHRFRYYVKDAPVISDAEFDRLLRSLEALEDQY
PELRTPDSPTQKVAGAYATEFTAVQHRERMLSLDNAFDDEELAAWADRVAKEVGTSAYHF
LCELKVDGLAVNLTYEQGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGDHVPDLVEI
RGEVYFPMEKFEELNARLVGGGDKPFTNPRNAAAGSLRQKDPRITATRPLHMVVHGIGAL
KGFKDGLTRLSEAYDLLKSWGLPTARHNKVVGDLDGVRQFIAYFGENRHSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPSECP
ECGTPLRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIEHFGYVAAAALTQPLEP
SEPPLKDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKIVTVFANQQGEPKKNA
LAMLENIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSIERIDQASEEELAATDGVG
PIIAASLKQWFTEDWHRDIIRKWKAAGVRMEEEGSGEDEGPRPLEGLTVVVTGTLGQYTR
DGAKEALQSRGAKVTGSVSKKTSFVVVGENPGSKYDKAMQLKVPVLDEDGFAVLLERGPE
AAAEVALPTGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacggtgcccgccgaggcccgggagcagcacgcg
cagctcgccgagcagatcgaggagcaccgcttccggtactacgtgaaggacgctcccgtc
atcagcgacgcggagttcgaccggctcctgcgctccctcgaagcgctagaggaccagtac
ccggagctgcgcacccccgactcgcccacccagaaggtcgcgggggcgtacgcgacggag
ttcacggccgtccagcaccgcgaacgcatgctctccctggacaacgcgttcgacgacgag
gagctcgccgcctgggccgaccgcgtcgccaaggaggtcggcacctccgcgtaccacttc
ctgtgcgagttgaaggtcgacggcctcgcggtcaacctcacttatgagcagggccgcctc
acgcgcgccgccactcgtggcgacggccgaaccggcgaggacatcactccgaacgtccgt
acgatcgcggagatcccggaccgcctcaagggcgaccacgtccccgacctcgtggagatc
cgcggcgaggtctacttcccgatggagaagttcgaggaactcaacgcccgactggtgggg
ggcggcgacaaacccttcaccaacccgcgcaacgcggcggccggttccctgcgccagaag
gacccgcgcatcacggccacccgcccgctgcacatggtggtccacggcatcggcgccctg
aagggcttcaaggacggcctcacgcgcctctccgaggcgtacgacctgctgaagtcctgg
ggcctgcccaccgcccggcacaacaaggtggtcggcgacctcgacggcgtacggcagttc
atcgcctacttcggggagaaccgccactccgtggagcacgagatcgacggagtcgtcgtc
aagctcgacgagatcccgctccagggccgcctcggctccacctcgcgtgccccgcgctgg
gcgatcgcgtacaagtacgcgccggaggaggtcaacaccaagctcatcaacatccgcgtg
ggcgtgggccgtacgggccgggtcacgccgtacgcgcaagtcgagccggtcacggtggcc
ggctcggaggtcgagttcgccaccctgcacaaccaggacgtggtcaaggccaagggcgtg
ctcatcggcgacacggtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggc
ccggtcgtcgacctgcgtgacggcaccgagcgggagttcgtgatgccgtccgagtgcccc
gagtgcggcacaccgcttcggcccatgaaggagggcgacgtcgatctacgttgcccgaac
gcgcgttcctgtcccgctcagttgcgcgagcgtctcttctacctggcgggccgcaaggcg
ctggacatcgaacacttcggatacgtcgccgccgccgccctcacccagcccttggagcct
tccgagccaccgctgaaggacgagggtgacctgttcgacctcaccgtcgaacagctgctg
cccatcaaggcgtacgtcctcgaccaggacagcggcctgcccaagcgcgacccgaagacc
ggcgaggagaagatcgtcacggtcttcgccaaccagcagggcgagccgaagaagaacgcg
ctcgcgatgctggagaacatcgcggccgccaaggagcgtccgctcgcccgcgtcctcacc
ggcctgtcgatccgtcacgtcggcccggtcgcggcggaggcgctggcccgcgagttccgg
tcgatcgaacggatcgaccaggcgagcgaagaggagctggcggccaccgacggggtcggg
cccatcatcgccgcctccctcaagcagtggttcaccgaggactggcaccgcgacatcatc
cgcaagtggaaggctgcgggcgtccgtatggaggaggagggctccggcgaggacgaggga
ccgcgtccgctggaggggctcacggtggtcgtcaccggaacgctcgggcagtacacccgg
gacggcgccaaggaggcgctgcagagtcgtggcgccaaagtgaccggttctgtctccaag
aagacgtccttcgtcgtggtgggggagaatcctgggtcgaagtacgacaaggccatgcag
ctgaaggtccccgtgctggatgaggacggtttcgccgtcctgttggaacgagggccggaa
gcagctgcggaagtcgcgcttccgaccggggagtag
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