Shewanella cyperi: JYB88_10755
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Entry
JYB88_10755 CDS
T07829
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scyp
Shewanella cyperi
Pathway
scyp03030
DNA replication
scyp03410
Base excision repair
scyp03420
Nucleotide excision repair
scyp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYB88_10755 (ligA)
03410 Base excision repair
JYB88_10755 (ligA)
03420 Nucleotide excision repair
JYB88_10755 (ligA)
03430 Mismatch repair
JYB88_10755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scyp03032
]
JYB88_10755 (ligA)
03400 DNA repair and recombination proteins [BR:
scyp03400
]
JYB88_10755 (ligA)
Enzymes [BR:
scyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JYB88_10755 (ligA)
DNA replication proteins [BR:
scyp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JYB88_10755 (ligA)
DNA repair and recombination proteins [BR:
scyp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JYB88_10755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYB88_10755 (ligA)
MMR (mismatch excision repair)
DNA ligase
JYB88_10755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYB88_10755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QSX28755
UniProt:
A0A975AJ62
LinkDB
All DBs
Position
complement(2486516..2488555)
Genome browser
AA seq
679 aa
AA seq
DB search
MEISAMSESKTVLDEILSLTDTLNRHNHAYYNLDAPTIPDAEYDRLMQRLKALEAEHPQW
QQPDSPTQRVGGEALDKFEQVSHLKPMLSLDNAFSEEDFLAFHKRVGDRIGSPVYCAEPK
LDGLAVSLLYRNGVLERAATRGDGSTGEDITQNVKTIKSIPLRLYGDALPALVEVRGEVF
MPKAAFDALNERALKSGDKQFVNPRNAAAGSLRQLDSRITAQRALAFYAYALGVVQDEAG
AALEVADNHKGQLEILASWGLPVSSEVKLCPTPEAVFDYYRDILARRAALAFEIDGVVIK
VNAMAQQQELGFIAKAPRWAIAFKFPAQEEVTVLEEVDFQVGRTGAVTPVARLKPVFVGG
VTVSNATLHNADEIARLGVKIGDSVIIRRAGDVIPQIVAIVPERRPDDARDIEFPSQCPV
CGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKAMDIDGMGDKIVEQLIDKELVQS
PADLFRLNASMLTMLERMGMKSATKLVEAIAHARQTSLPRFLYALGIREVGEATAANLAR
HFLTLEAIQAADVDALMQVEDVGEVVARHVAHFFAQPHNLEVIDKLLAAGVNWPAIEAPS
ADAQPLKGQTWVLTGTLTSLGRTEAKAKLEALGAKVAGSVSKNTDCLVAGEAAGSKLAKA
QELGVKVLDEDGLLALLGA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggaaatttctgccatgtccgagtccaagactgtgcttgacgagatactgtccctcacc
gacacacttaaccgccacaatcacgcctactacaacctggatgcccccaccattccggat
gccgaatacgaccgtctgatgcaaaggctcaaggcgctggaggccgaacacccccagtgg
cagcagccggattcaccgactcaaagggtgggcggtgaggcgctggacaagtttgagcag
gtcagccatctgaagcccatgctgagcctggacaatgccttcagcgaagaagacttcctg
gcgtttcacaagcgggtgggcgatcgcatcggcagccctgtgtactgcgccgagcccaag
ctcgatggcctggccgtgagcctgctgtaccgcaacggcgtgctggagcgggccgccacc
cgcggcgatggcagcacgggagaagacatcacccagaacgtcaaaaccattaaatcaatc
ccactgcgcctatacggagacgcgttgcctgctttggtggaagtgcgcggcgaagtgttt
atgcccaaggcggccttcgatgccctcaacgagcgcgcccttaagagcggcgacaagcag
ttcgttaatccccgcaacgctgccgccggcagcctgaggcaactggacagccggatcacg
gcccagcgggcactggccttttacgcctatgccctgggcgtggtgcaggatgaggccggg
gccgcgctggaggtggcggacaaccataagggccagctggagatcctcgcctcctggggc
ctgccggtcagctcagaggtgaaactgtgccccacgcccgaggccgtatttgactattac
cgcgacatattggcgcgccgtgctgccctggcgttcgaaatcgatggcgtggtgatcaag
gttaacgccatggcgcagcagcaggagttgggctttattgccaaggcgccgcgctgggcc
atcgcctttaagtttccggcccaggaagaagtgactgtgctggaagaagtggatttccag
gtgggccgcaccggcgccgtcacccctgtggcccggttgaagcctgtgtttgtcggcggc
gtgacagtgtccaacgccacactgcacaacgccgatgaaatcgcccgtctgggagtcaag
ataggcgacagcgtgattattcgccgtgccggtgatgtgatcccgcaaatcgtggccata
gtgcctgagcgccgtcccgatgatgcccgcgatattgaatttccgagccagtgtccggtc
tgtggctccttggtggagcgcctggaaggtgaggccgtggcccgttgcagcggtggtctg
ttctgcgaggcccagcgcaaggaggccatcaagcattttgcctcccgcaaggccatggac
atagacggcatgggcgacaagatagtggagcagcttatcgacaaggaactggtgcagagt
ccggcggatctgttccgcctcaacgcctccatgctgaccatgctggagcgcatgggcatg
aagtcagccaccaagctggtggaggccattgctcacgcgcgccagaccagcctgccacgt
tttctgtatgcactggggatccgcgaagtgggtgaggccacggccgccaacctggcccgg
cacttcctgaccctggaggccattcaggccgccgatgtggacgccctgatgcaggtggag
gatgtgggcgaggtggtggcccgtcacgtggctcacttctttgcccagccccacaacctg
gaagtcatagacaagttgctggccgccggcgttaactggcccgccattgaagccccttcg
gccgatgcccagccgcttaagggccaaacctgggtactgaccggcactctgaccagcctg
ggccgtaccgaggccaaggcaaagttggaagcgctcggggccaaggtggcgggcagcgtg
tcgaaaaacaccgattgcctggtggccggtgaggctgccggttccaaactggccaaggcc
caggagctgggggttaaggtgctggacgaggatggcctgttggccctgctgggcgcctga
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