Scytonema sp. HK-05: SAMD_80890
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Entry
SAMD_80890 CDS
T09974
Name
(GenBank) RND family efflux transporter MFP subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
scyt
Scytonema sp. HK-05
Pathway
scyt01501
beta-Lactam resistance
scyt01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
scyt00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
SAMD_80890
01503 Cationic antimicrobial peptide (CAMP) resistance
SAMD_80890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
scyt03036
]
SAMD_80890
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scyt02000
]
SAMD_80890
01504 Antimicrobial resistance genes [BR:
scyt01504
]
SAMD_80890
Chromosome and associated proteins [BR:
scyt03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
SAMD_80890
Transporters [BR:
scyt02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
SAMD_80890
Antimicrobial resistance genes [BR:
scyt01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
SAMD_80890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
HlyD_3
Biotin_lipoyl_2
Biotin_lipoyl
HlyD_2
PYNP_C
Peptidase_M23
ATP-synt_ab_Xtn
CusB_dom_1
Herpes_UL14
SH3BP5
Motif
Other DBs
NCBI-ProteinID:
BAY50460
LinkDB
All DBs
Position
plasmid1:691396..692622
Genome browser
AA seq
408 aa
AA seq
DB search
MLKVNTLLTIKLLGIAFLASFLTSACKGGETSAKAIAAPAIPVKLQALKSSQFINSSEFV
GSLEATKRVDLKPEIEGRITEIRVSNGDRVSKGTPIAQLRSDQTQAQYASAIARANSTRA
ASETAQARLRAARADQVRSASEVELQKVQFQRTERLVNEGVQPRQELDIARRNLNTGVAS
LRAGEEQVGAARSSLNQANADLKQAQAEAAAANVSLQYKQVVAPITGVIGDFSVKIGDYV
NTGQTLTSITQNESLDLRISVPINRSSQLRPGLPVELVDPNTNKRLATGSINFISPQVNS
GNQAILTKARFPNQNNSLRDQQFVRAKVIWSKSPGILIPTVAVSTSGTQNFVFIAQKGEK
TVVRQRPVQLGNIQGQSYQVLNGVKPGEEIAVTQILNLKNGTSIKPES
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaagtcaatacattactcacaataaagttgctaggtatagcctttctagcctct
ttcctgaccagcgcctgcaaaggaggtgaaacttcggctaaggcgattgcagcgcctgct
attcctgtaaagttgcaagcgctaaaatccagccagtttataaacagttctgagtttgtg
ggatcgctagaagccacaaagagagttgacctaaaaccggagatcgagggtcggattact
gagattcgtgtttcaaatggagatcgcgttagtaagggaacaccgattgcacaacttcgt
tccgatcaaactcaagctcaatacgcaagtgctattgccagagccaactctactagggca
gctagcgaaactgcccaggcgaggctccgagccgcacgggcagaccaggtcagatctgcg
tccgaagtagaactccagaaagtacagttccagcgaactgagcgacttgtcaatgaaggg
gtacagcctaggcaggaattggacattgcccggagaaacctgaatacaggggttgcctcc
cttcgcgctggcgaggaacaggtaggagctgcaagatccagtttaaatcaggcgaatgcc
gacctcaagcaggctcaggcagaagctgctgctgcaaatgtctctctccagtacaaacag
gtggttgccccgatcacaggtgtaattggcgacttctcagtcaagatcggagactacgtt
aacactggtcaaactctaaccagtattacccaaaatgagtctctagatctgcggatttcg
gttcccataaaccgttcatcacaactgcgaccgggactgccggtcgagctagttgacccc
aatacaaataagcgcctagccacggggagtatcaactttatctcccctcaggtaaactct
ggcaaccaggctatcttaacgaaggcacgctttcctaaccaaaataacagcttacgcgat
cagcaatttgttagagcaaaagttatttggagcaaaagtccggggattttgatccccacg
gtggcagtgtctaccagcggtacacagaactttgtctttatagcccagaaaggggaaaaa
acagttgttcggcaaagacctgttcaactaggaaacatccaaggtcagagttaccaagtg
ctcaatggggtcaagcccggagaagagattgctgtaacgcaaattcttaacttgaaaaac
ggcacttccattaagcctgaatcctaa
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