KEGG   Streptomyces sp. CFMR 7: ABE83_04565
Entry
ABE83_04565       CDS       T04074                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
scz  Streptomyces sp. CFMR 7
Pathway
scz03030  DNA replication
scz03410  Base excision repair
scz03420  Nucleotide excision repair
scz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:scz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ABE83_04565
   03410 Base excision repair
    ABE83_04565
   03420 Nucleotide excision repair
    ABE83_04565
   03430 Mismatch repair
    ABE83_04565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scz03032]
    ABE83_04565
   03400 DNA repair and recombination proteins [BR:scz03400]
    ABE83_04565
Enzymes [BR:scz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ABE83_04565
DNA replication proteins [BR:scz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ABE83_04565
DNA repair and recombination proteins [BR:scz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ABE83_04565
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ABE83_04565
   MMR (mismatch excision repair)
    DNA ligase
     ABE83_04565
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ABE83_04565
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 HHH_5 BRCT PTCB-BRCT HHH Nlig-Ia HHH_3 DNA_ligase_ZBD DUF7575
Other DBs
NCBI-ProteinID: ALC26426
LinkDB
Position
complement(1185942..1188269)
AA seq 775 aa
MVGGRMVTMTNSAAVLADAAAYAAAVEEASRAAAAYYATGESTLDDDAYDRLARGIAAYE
AEHPDEIHESSPTGKVAGGAAVGDVPHTVPMLSLDNVFSAEQFVTWTASLERRIGRPVAA
WSVEPKLDGLAVAARYRAGRLEQLITRGDGTAGEDVSHAAAAVVGLPERLDAPVTLEVRG
EILMTNEQFEQGNAIRTEHGGAPFANPRNGAAGTLRAKDRAYRVETTFFAYGALPLAGSG
EITETLTELPHSELLAYVAGLGVHTAAATEVAPVRVSTVEEVQARVEEIAALRAALPFGI
DGIVIKADLAADQREAGSGTRAPRWAIAHKLPAVEKITRLLSVEWNVGRTGIIAPRAVLE
PVEIDGSTVGYATLHNPADITRRDLRLGDQVMVYKAGDIIPRIEAPVAHLRTGDETPIVF
PESCPQCGSEIDMSEQRWRCTRGRNCRLVASVSYAAGRDQLDIEGLGATRVVQLVDAGLV
TDFADLFTLEREQLLALDRMGETSTDNLLAAIETARSRPLSRVFCALGVRGTGRSMSRRI
ARYFATMDHIVAADAESLQRVDGIGKEKAAAVVEELAELAPLIDKLVRAGVTMTEPGATP
PPEPGTEEQEGAGAGAELPLAGMKVVVTGAMTGALEKLSRNQMNELIERAGGKSSSSVSA
RTSLLVAGEKAGSKRTKAEGLGIRIADPEEFAELLADFLTGEGAAVTETGAAGGTGETGE
AVGVVAVAEAVVEVAAVAEAVSEAEVVAVAEVVAVAEAEVGRDAGETEVVQVVQA
NT seq 2328 nt   +upstreamnt  +downstreamnt
gtggtgggcggcaggatggtcaccatgacgaactcagccgctgtgctcgccgatgccgcc
gcctatgccgccgcggtcgaagaggcctcccgggccgccgccgcgtactacgccacgggc
gagagcaccctcgacgacgacgcctacgaccggctggcgcgcggcatcgccgcgtacgag
gcggagcatcccgacgagatacacgagtcatcaccgaccgggaaggtggcgggcggggcc
gccgtcggggacgttccgcacacggtgccgatgctctcgctcgacaacgtgttctcggcc
gagcagttcgtgacctggaccgcctcgctggagcggcgcatcggcagacccgtcgcggcc
tggagcgtggagccgaagctcgacggcctcgcggtcgccgcgcgctatcgggccggccgc
ctggagcagttgatcacccggggcgacggcacggcgggcgaggacgtctcgcacgccgcc
gcagcggtcgtcggcctgcccgagcggctggacgcaccggtcacgctggaggtgcgcggc
gagatcctcatgacgaacgagcagttcgagcagggcaacgcgatccgcacggagcacggc
ggcgcccccttcgccaacccgcgcaacggagcggcgggcaccctgcgcgccaaggaccgg
gcctaccgggtggagacgacgttcttcgcgtacggggccctgccgctcgccggttcgggg
gagatcaccgagaccctcaccgagctgccccacagcgaactcctcgcgtacgtcgcgggg
ctcggcgtgcacacggccgcggccacggaggtggcaccggtccgggtgtccaccgtggag
gaggtgcaggcgcgggtggaggagatagccgccctgcgggccgcgctgcccttcggcatc
gacggcatcgtgatcaaggcggacctcgcggccgaccagcgcgaggccggttccggcacc
cgggcgccgcgctgggccatcgcccacaagctgcccgccgtggagaagatcacccgcctc
ctctccgtcgagtggaacgtgggccgtacgggcatcatcgcgccgcgtgccgtcctggag
cccgtcgagatcgacggatcgaccgtcgggtacgccaccctgcacaacccggccgacatc
acccgccgcgatctgcgcctgggcgaccaggtcatggtctacaaggcgggcgacatcatc
ccgcgcatcgaggccccggtcgcccatctgcgcaccggggacgagacgccgatcgtcttc
cccgagagctgcccgcagtgcggctccgagatcgacatgagcgagcagcgctggcgctgc
acccggggccgcaactgccgcctggtcgcctccgtctcgtacgcggcgggccgcgaccag
ctcgacatcgagggcctcggggcgacccgggtcgtccagctcgtcgacgcgggcctggtc
acggacttcgcggatctgttcaccctggagcgggagcagctcctcgccctggaccggatg
ggcgagacctccaccgacaatctcctcgccgccatcgagaccgcccgatcccgcccgctc
tcccgggtcttctgcgccctgggcgtacgggggacggggcgctccatgtcccgccggatc
gcgcggtacttcgcgaccatggaccacatcgtcgccgccgacgccgagtccctccagcgg
gtcgacggcatcggcaaggagaaggccgcggcggtcgtcgaggagctggcggagctggcc
ccgctgatcgacaagctcgtccgggccggggtgacgatgacggagccgggggccaccccg
ccgccggagcccggcacggaggagcaggagggcgcgggggccggtgcggagctgccgttg
gcggggatgaaggtggtggtcacgggcgccatgaccggggcgctggagaagctgtcgcgc
aaccagatgaacgagctgatcgagcgggcgggcgggaagtcgtcctccagcgtctccgcg
cgcaccagcctgctggtcgcgggcgagaaggccgggtcgaagcggacgaaggcggagggg
ctgggcatccggatcgcggacccggaggagttcgcggagctgctggcggacttcctgacg
ggggagggcgcggcggtcacggagaccggggcagccggggggaccggcgagaccggcgag
gccgtgggggttgtcgcggtggcggaggccgttgtggaggtggccgccgtggcggaggcg
gtgagcgaggccgaggtggtggccgtggcagaggtggtggctgtggcggaggccgaggtc
gggcgggacgccggggagacggaggtcgtgcaggtcgtgcaggcgtag

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