Streptococcus dysgalactiae subsp. equisimilis RE378: GGS_0690
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Entry
GGS_0690 CDS
T02269
Symbol
lig
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sda
Streptococcus dysgalactiae subsp. equisimilis RE378
Pathway
sda03030
DNA replication
sda03410
Base excision repair
sda03420
Nucleotide excision repair
sda03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GGS_0690 (lig)
03410 Base excision repair
GGS_0690 (lig)
03420 Nucleotide excision repair
GGS_0690 (lig)
03430 Mismatch repair
GGS_0690 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sda03032
]
GGS_0690 (lig)
03400 DNA repair and recombination proteins [BR:
sda03400
]
GGS_0690 (lig)
Enzymes [BR:
sda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GGS_0690 (lig)
DNA replication proteins [BR:
sda03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GGS_0690 (lig)
DNA repair and recombination proteins [BR:
sda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GGS_0690 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GGS_0690 (lig)
MMR (mismatch excision repair)
DNA ligase
GGS_0690 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GGS_0690 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Med20
DUF4164
Relaxase_C
Motif
Other DBs
NCBI-ProteinID:
BAM60843
LinkDB
All DBs
Position
709467..711425
Genome browser
AA seq
652 aa
AA seq
DB search
MKKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPTQNVG
GTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRVKSEFPDATYLAELKVDGLSISLSYE
NGQLQVGATRGDGSVGENITENLKQIKDIPQVLPQPLTITVRGEAYMSRQSFKAINEERQ
ENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQEASPTTRSQQNHVLKALADLGFS
VNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLRVVSDKRQEQVPMWIPSQCPSCQSDLVHFEDEVALRCINPLCPS
LIQRGLEHFASRNAMNIAGLGPAVVEKLFLAGLVHDVADIYKLTKEDLLHLDGIKEKSAE
KLLAAIETSKSNSAEKLLFGLGIRHIGAKASRLILETCGDIEHLLTVREEDIATIDGLGM
VIAKSLVQYFQQDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRND
AKAKLETLGAKVTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacgcataagagaattgacggaattgcttaaccgttaccgtcaagaatactat
accaatgattccccttctgtttctgatagtgagtacgataagctttatcgtgagctagtg
gatcttgaaaaccaataccctgagcatgtcttacaagatagcccaactcagaatgtcgga
ggaacccttctcactggttttgacaaataccagcaccagtatccgctatttagtttgcag
gatgctttttcgcgtgaggaattggatgcctttgacaagcgggttaaatcggaatttcct
gatgctacttatctagcagagctaaaagttgacggcttatccatctctttaagttatgaa
aatggtcaattacaggtgggagctacccgcggagatggtagtgttggtgaaaacattaca
gagaatcttaaacagattaaagatattcctcaagtactgcctcaacccctgaccataact
gttcgaggagaggcctacatgtctcggcaatcgtttaaagcaattaatgaagagagacag
gaaaacggtgaaacagaatttgccaatcctagaaatgctgctgcgggtaccttgaggcaa
ttagatacggcggtagtggccaagcgtcaattggctacttttctctatcaagaagctagt
cccacaaccagaagtcagcaaaatcatgtcttgaaagcattagccgatttgggcttctca
gttaatcagcgtcaccatctgtcatcctctatggatgagatttgggattttattcaaact
gtggaggcagaacgcgatcaattggcttatgatattgacggtattgtcatcaaagtgaat
aacttagccatgcaagaagagttgggatttacggttaaagcgccacgttgggcgattgcc
tacaagtttccagcagaagaaaaagaggcagaaatcctttcggttgactggacagttggt
agaacaggtgtggttaccccaacagcaaacttgacaccagttcaattagctggaacaacg
gtcagcagggctaccttgcataacgtcgattatattgcggaaaaagatattcgaattgga
gatactgtaattgtctataaagcgggggatattattcctgctgtcttgcgcgtggtttct
gacaagcgacaggaacaggtgcctatgtggattccaagtcaatgcccatcttgtcagagt
gatttggtgcattttgaggatgaagtagctctacgctgtatcaatcctttgtgtccgagt
ttgattcagcgagggttggaacattttgccagtcgaaatgccatgaatattgctgggctt
gggcctgctgttgtggaaaaactctttttagcagggcttgttcacgatgtggcagatatt
tacaagcttactaaggaagatcttctacatctagatggtatcaaagaaaagtcggccgaa
aaattgctagcagctattgaaacgtccaaatcaaattcagccgagaaattgttatttggt
ttaggcattcgtcacattggtgctaaggctagtcgtttaattttggaaacttgtggagac
attgagcatctcttaacggttagagaagaagacattgcgactattgatggtctgggcatg
gtaattgctaaatcattggttcaatattttcaacaagattctgccattcttttagtagaa
gaactaaagaatgctggggttaacttagcttatttaggacagaagattgatagtaatgca
gaattatttggcttaacggttgttttaacgggcaagttggagaaaatgactcgcaacgat
gcaaaagcaaaattagaaaccttaggtgctaaagtgactggcagtgtgtctaagaaaaca
gacttggtgattgctggaagtgatgcagggtctaagttggagaaagcgcaggctttaggc
attcgaatcgagggtgaagagtggctagagcagctttaa
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