Staphylococcus debuckii: CNQ82_09360
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Entry
CNQ82_09360 CDS
T07127
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdb
Staphylococcus debuckii
Pathway
sdb03030
DNA replication
sdb03410
Base excision repair
sdb03420
Nucleotide excision repair
sdb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CNQ82_09360 (ligA)
03410 Base excision repair
CNQ82_09360 (ligA)
03420 Nucleotide excision repair
CNQ82_09360 (ligA)
03430 Mismatch repair
CNQ82_09360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdb03032
]
CNQ82_09360 (ligA)
03400 DNA repair and recombination proteins [BR:
sdb03400
]
CNQ82_09360 (ligA)
Enzymes [BR:
sdb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CNQ82_09360 (ligA)
DNA replication proteins [BR:
sdb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CNQ82_09360 (ligA)
DNA repair and recombination proteins [BR:
sdb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CNQ82_09360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CNQ82_09360 (ligA)
MMR (mismatch excision repair)
DNA ligase
CNQ82_09360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CNQ82_09360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
HHH
DUF7575
Motif
Other DBs
NCBI-ProteinID:
AYU55624
LinkDB
All DBs
Position
complement(1953517..1955523)
Genome browser
AA seq
668 aa
AA seq
DB search
MAELAARVQELHHLLNKYSHEYYVQDNPSVPDSEYDKLLRELIDIENAHPEYKTEDSPTV
RVGGEAQVTFNKVRHDTPMLSLGNAFNEEELRRFDARVREKAGKVEYMCELKIDGLAVSL
KYEEGRFVQGLTRGDGTIGEDITANLRTIRAIPLRINKPLTFEVRGEAYMPKKSFEHLNQ
QKEEAGEQAFANPRNAAAGSLRQLDSKLASKRRLSVFLYSVNDFTNFHAESQSEALDELD
ELGFKTNQNRKRVADIEGVLEYIKYWTAHREALPYDIDGIVIKVNDLEEQDELGFTQKSP
RWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAVLEPVRVAGTTVSRASLHNEDLIHEK
DIRIGDSVVIKKAGDIIPEVIRSLPERRPEGTETYHMPTHCPSCGHELVRLDGEVALRCI
NPKCPAQLVEGMIHFVSRQAMNIDGLGTKIIMQLYENEIIKDVGDLYYLTKDDLLPLERM
GEKKADNLLKAIEDSKDNSLEHLLFGLGIRHLGVKASQVIAERFETMDRLFKVTEEELLE
IHDIGDKLATSLITYLNNEDIIALIEKLRRKNVNMTYEGLKTTEIQTDSEFNGKTVVLTG
KLHNMTRTEASKWLEAQGAKTTSSVTKNTDLVIAGEDAGSKLTKAEKLGTEVWSEEEFME
KQKEIENK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacttgcagctcgagtacaagagttacatcatcttttaaataaatacagtcat
gaatattatgttcaagacaatccgtcagttcctgatagtgaatacgataagttactgcgt
gaattgattgatatcgaaaatgcacacccagaatataaaacagaagattctccgacagtc
agagtaggcggagaagcacaagtgacttttaacaaagtacgtcatgatacacctatgctt
agtttaggcaacgcgtttaatgaagaagaattgcgtcgctttgatgcacgtgtacgtgaa
aaagcaggcaaagtggaatacatgtgtgaattgaaaattgatggtttagccgtttctttg
aaatatgaagagggccgcttcgtgcaaggtttaacgcgtggtgacggtaccatcggagag
gatattactgccaatttacgtacgattcgcgcgattcccttgcgtatcaataaaccgctg
acatttgaagtacgcggcgaagcttatatgccgaagaaatctttcgagcatttaaatcag
caaaaggaagaagcgggcgagcaagcttttgccaatcccagaaatgcagcagcaggttca
ttgcgccagttagattcgaaacttgcatctaaacgccgactcagtgtctttttatatagt
gtaaatgattttacgaatttccacgctgaatctcaaagtgaagctttagatgaattagat
gaactcggtttcaaaaccaatcaaaatcgtaaacgagttgcagacattgagggtgtgtta
gagtatattaaatattggacagcacatcgtgaagcattaccttatgatatcgacggtatt
gtaatcaaagtcaatgatttagaagaacaagatgaacttgggtttactcagaaatcacca
agatgggctattgcttataaattccctgctgaagaagtagtgaccaagttactagatatc
gagttgagtatcggcagaacaggagtagttacgccaactgccgtgttagaacctgtcaga
gttgcaggtacgacagtttctcgcgcttctttgcataatgaggatttgattcatgagaag
gatatccgtattggagacagcgtagtgattaaaaaggcaggagatattattcctgaagtt
attcggagcttacctgaacggcgaccagaaggtactgaaacctatcacatgccgacgcat
tgtccaagttgcggtcacgaattagtccgtttagatggtgaagtggcgttacgttgtatc
aaccctaaatgcccagcacaattagtagaaggtatgattcattttgtctctagacaagcc
atgaatatcgatggattaggtactaagattattatgcagctctatgaaaatgaaatcatc
aaagatgtcggcgatctttattatttaactaaagatgatttattaccgcttgaaagaatg
ggtgaaaagaaagcggataatttattaaaagcaatcgaagattcgaaggataattcactc
gaacatcttttgttcggattaggtatcagacatttaggtgtcaaagccagccaggtgatt
gctgagcgttttgaaaccatggatagattatttaaagttactgaagaagagttgctggaa
attcatgacatcggtgataaattagcgacatctttaattacgtatttaaataacgaagac
attatcgctttaattgaaaaactgcgcagaaaaaatgttaatatgacatatgaaggccta
aaaacaacagaaatccagactgattctgagtttaacggcaaaacggttgtgttaactggt
aaactgcataacatgacgcgtactgaagcttcaaaatggcttgaagctcaaggtgccaaa
acaacgagcagcgtaactaaaaatacagatcttgtaattgcaggagaagatgcaggttct
aaattaactaaggcagaaaaacttggtactgaagtctggtctgaagaagaatttatggaa
aaacaaaaagaaattgaaaacaaataa
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