Streptomyces dangxiongensis: D9753_10565
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Entry
D9753_10565 CDS
T08044
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdd
Streptomyces dangxiongensis
Pathway
sdd03030
DNA replication
sdd03410
Base excision repair
sdd03420
Nucleotide excision repair
sdd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D9753_10565 (ligA)
03410 Base excision repair
D9753_10565 (ligA)
03420 Nucleotide excision repair
D9753_10565 (ligA)
03430 Mismatch repair
D9753_10565 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdd03032
]
D9753_10565 (ligA)
03400 DNA repair and recombination proteins [BR:
sdd03400
]
D9753_10565 (ligA)
Enzymes [BR:
sdd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D9753_10565 (ligA)
DNA replication proteins [BR:
sdd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D9753_10565 (ligA)
DNA repair and recombination proteins [BR:
sdd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D9753_10565 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D9753_10565 (ligA)
MMR (mismatch excision repair)
DNA ligase
D9753_10565 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D9753_10565 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
AYN39279
UniProt:
A0A3G2JEY1
LinkDB
All DBs
Position
complement(2401756..2403951)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTAVPAEAREKHAKLAEQIEEHRFRYYVKDAPVVSDAEFDTLLKALEALEEE
YPELRSPDSPTQKVAGAYETEFTAVEHRERMLSLDNTFNDDELAAWADRIARELGGQTYH
FLCELKVDGLAVNLTYENGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLDGDRVPDVVE
IRGEVYFPMEKFLELNERLVAAGDKPFANPRNAAAGSLRQKNPRVTATRPLHMVVHGIGA
LEGYTGMTRLSQAYELLKGWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEIDGAVV
KLDELRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVRAKNVLIGDTVVIRKAGDVIPEILGPVVDLRDDSVREFVMPGECP
ECRTPLRPMKEGDIDLRCPNARACPAQLRGRVSYLAGRECLDIEHFGEVAAAALTRPLEP
ADPPLVDEGDLFDLTVEKLLPIKAYVLDPASGLPKRDPRTGEEKVVTVFANQKGEPKKNT
LALLANIEAAKSRPLARFLNGLSIRHVGPVAAQALAREFRSVDRIERATEAELAATDGVG
PIIAAALKEWFAEDWHREIIRKWKAAGVPLEEQSSGEDEGPRPLAGLTVVVTGTLENHTR
DGAKEALQSRGAKVVGSVSKKTSFVVVGDNPGSKYDKAVQAKVPILNEDGFNVLLEQGPE
AAAEVALPTEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaggcggagacgacggcggtgcccgccgaggcccgcgagaagcac
gcgaagctggcggagcagatcgaggagcaccgcttccggtactacgtgaaggacgctccc
gttgtcagcgacgcggagttcgacacgctcctgaaggccctggaggccctggaggaggag
tatccggagctgcgcagcccggactcgccgacccagaaggtcgccggggcgtacgagacg
gagttcaccgcggtcgagcaccgcgagcggatgctctcgctcgacaacaccttcaacgac
gacgagctggccgcctgggccgaccgcatcgccagggaactgggcggccagacctaccac
ttcctgtgcgaactgaaggtggacggcctcgcggtcaacctcacctacgagaacggccgg
ctcacacgcgcggccacccggggcgacggccgcaccggcgaggacatcacccccaacgtc
cgcacgatcgccgagatcccggaccgcctcgacggcgaccgggtgccggacgtggtggag
atccgcggcgaggtctacttcccgatggagaagttcctcgagctgaacgaacgcctcgtc
gcggccggcgacaagcccttcgccaacccgcgcaacgccgccgccggttcgctgcgccag
aagaatccgcgggtcaccgccacccgcccgctgcacatggtcgtccacggcatcggcgcc
ctggaggggtacacgggcatgacccggctctcgcaggcctacgaactgctgaagggctgg
ggcctgccgacctctccgcacaaccgcgtggtcgacggcctcgacggcgtacgggagttc
atcgcgtactacggcgagaaccgccactccgtcgcgcacgagatcgacggggccgtggtc
aagctggacgaactgcgcctccaggggcggctcggctccaccgcgcgggccccccgttgg
gcgatcgcctacaagtacgcgcccgaagaggtgaacaccaagctcatcgacatcaaggtg
ggtgtcggccgcaccggccgcgtcacgccgtacgcccaggtcgagccggtcacggtcgcg
ggcagcgaggtggagttcgcgaccctgcacaaccaggaggtcgtccgggccaagaacgtc
ctcatcggcgacacggtcgtcatccgcaaggccggtgacgtcatcccggagatcctcggc
ccggtcgtcgacctccgggacgacagcgtgcgggagttcgtgatgccgggcgagtgcccg
gagtgccgcacgccgctgcggcccatgaaggagggcgacatcgacctccgctgccccaac
gcgcgtgcttgcccggcccagttgcggggacgtgtctcctacctcgccggccgcgagtgc
ctggacatcgagcacttcggcgaggtggccgccgccgcgctcacccgcccgctggagccg
gccgacccgccgctggtggacgagggcgacctgttcgacctgacggtggagaaactgctg
cccatcaaggcctacgtcctcgatcccgccagtgggctgcccaagcgcgaccccaggacg
ggggaggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacacc
cttgcgctgctggccaacatcgaggccgccaagtcccgtccgctggcccggttcctgaac
ggactgtccatccggcacgtcggcccggtggccgcgcaggccctcgcgcgcgagttccgg
tccgtcgaccgcatcgagcgggcgaccgaggcggagcttgcggccaccgacggcgtcggc
ccgatcatcgccgccgcgctcaaggagtggttcgccgaggactggcaccgcgagatcatc
cgcaagtggaaggccgccggggtcccgctggaggagcagtcgtccggcgaggacgagggg
ccgcgcccgctggcggggctcacggtcgtcgtcaccggcacgctggagaaccacacccgg
gacggcgccaaggaggcgctccagagccggggcgcgaaagtggtcggttcggtgtcgaag
aagacctcgttcgtcgttgtgggtgacaaccccggatcgaagtacgacaaggccgtgcag
gcgaaggtgccgatcctgaacgaggacggtttcaacgtccttctggagcaggggccggag
gcagcggccgaagtcgcgcttccgaccgaggagtag
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