Saccharophagus degradans: Sde_0843
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Entry
Sde_0843 CDS
T00335
Name
(GenBank) UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
sde
Saccharophagus degradans
Pathway
sde00300
Lysine biosynthesis
sde00550
Peptidoglycan biosynthesis
sde01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Sde_0843
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
Sde_0843
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sde01011
]
Sde_0843
Enzymes [BR:
sde01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
Sde_0843
Peptidoglycan biosynthesis and degradation proteins [BR:
sde01011
]
Precursor biosynthesis
Amino acid ligase
Sde_0843
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
YqeC
tRNA_lig_kinase
Motif
Other DBs
NCBI-ProteinID:
ABD80105
UniProt:
Q21MH4
LinkDB
All DBs
Position
1094855..1096411
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AA seq
518 aa
AA seq
DB search
MSDIEITIAQLLQGVWLAEAPLDASVANIKVSGVSLDNRTLSAGSVFIAVPGDKVDGRAF
IEKCDSATAAILAEADTFGVDLTGAVPVVHIPQLKQKISRVAANFYGHPSRSLTIIGITG
TNGKTTCAYLLAQLLSKLQFSCGMVGTLGFAKFDECGAPVNLTDTGLTTPSALDCQKILA
ELQQQVGAVAMEVSSHGLAQGRVADVDFNGAIFTNLSRDHLDYHASLEEYAATKAALFAR
EELSFVVINADDAVGVNILTNGVAPQAITYSYSLGGEQALVAQSENTIVAHSIEWGSSQT
VAQLHTPWGAAELATGLVGRYNLSNVLAVLTTACALGYPLVDVVAQVKTLQAAPGRLQRV
NSSEQPLAVFVDYAHTPDALEKVLSEVAAYTQGKLWVVIGCGGNRDVGKRPLMAEVAERL
ANCVVLTSDNPRDENPELILKDMLAGLKNKDAAMVIADRKNAIEYAVANAAENDAIVIAG
KGHENYQLVKGEKLPFDDALIAKEFLAAKCFSHARGQA
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatattgaaatcactattgcgcaattacttcagggtgtttggctggccgaggcg
ccgctagatgcgagcgttgccaacataaaagtaagtggggtgtctttagataaccgtact
ttaagcgctggcagcgtatttattgctgtacctggcgacaaagtagatggacgcgctttt
attgaaaaatgtgacagtgcaaccgctgcaatattggcagaggcagatacgttcggtgtc
gacttaactggtgctgtacctgtggtacatattccacagttaaaacaaaaaataagtcgg
gtggcggctaatttttatggtcacccttcgcgctctttaacaattattggcattactggt
actaacggtaaaaccacatgtgcctatttgctcgcgcaattgttaagcaaattacaattt
tcgtgcggcatggtgggcacgctaggtttcgcaaagtttgatgaatgcggtgcacccgtt
aatttgactgatacaggcttaactacaccttctgcgctagattgccaaaaaattctagct
gaactacagcagcaggtaggtgcagtggcaatggaagtgtcttctcacggcttggcgcaa
gggcgcgtggcagacgtggattttaatggcgcaatttttaccaatttaagtcgcgaccat
ttggattaccacgcaagcctcgaagaatatgctgccaccaaagctgcgttatttgcgcga
gaagagttgagctttgtagtaatcaatgccgatgacgcagtgggtgtgaatattttaact
aatggcgtggcgccgcaagccatcacttatagctacagtcttggcggtgagcaagctttg
gttgctcaaagtgaaaacacaattgttgctcactctattgaatggggttctagccaaacc
gtcgcgcagttgcatacaccttggggtgcagctgaattagcaacagggctagttggccga
tataacttaagcaacgtgttggctgtacttacaacagcttgtgcattgggttatccattg
gtggacgtggtcgcacaggtgaagactctgcaagccgcgccgggtcgactgcagcgtgta
aatagcagtgagcagccattggcggtatttgtagattacgcgcacacgcccgacgcactt
gaaaaagtacttagcgaagtggccgcatatacgcaaggtaagttgtgggtagtgataggt
tgtggtggtaatcgcgatgtaggtaaacgtccattaatggcagaagtggcagagcgttta
gctaattgcgtggtattaacatctgataacccgcgcgatgagaacccagagcttatttta
aaagatatgcttgctggccttaaaaacaaagatgcggcgatggttattgctgatcgaaaa
aacgcaatcgaatacgccgtcgcaaatgcagccgaaaacgatgcgattgttattgcgggt
aaaggccacgaaaattaccagcttgtcaaaggagaaaaactaccgtttgacgatgcatta
atagctaaagaatttttagcagccaaatgcttttcgcatgcgcgaggtcaagcgtaa
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