Saccharophagus degradans: Sde_1881
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Entry
Sde_1881 CDS
T00335
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sde
Saccharophagus degradans
Pathway
sde03030
DNA replication
sde03410
Base excision repair
sde03420
Nucleotide excision repair
sde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sde_1881
03410 Base excision repair
Sde_1881
03420 Nucleotide excision repair
Sde_1881
03430 Mismatch repair
Sde_1881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sde03032
]
Sde_1881
03400 DNA repair and recombination proteins [BR:
sde03400
]
Sde_1881
Enzymes [BR:
sde01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sde_1881
DNA replication proteins [BR:
sde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sde_1881
DNA repair and recombination proteins [BR:
sde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sde_1881
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sde_1881
MMR (mismatch excision repair)
DNA ligase
Sde_1881
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sde_1881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
ABD81141
UniProt:
Q21JI8
LinkDB
All DBs
Position
2374707..2376731
Genome browser
AA seq
674 aa
AA seq
DB search
MAASDAVLDKLESLKNQINYHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELVTEDS
PTQRVGAAPLDSFASIEHKRPMLSLDNVFNVEELFAFDKRIRDRINADASLEYSCEPKFD
GIAASLLYENGRLKTAATRGDGTVGEDITQNMRTIGSVPLKLEGNNIPAVLEVRGEVYMP
KAGFLRINEEALAKNEKTFVNPRNAAAGSLRQLNPQITAKRPLVFCAYNVGVVEGGELPA
THYETLTQLFEWGFLVSEERRIAKGIEECEAYYHYLEAKRESLAYDIDGIVFKVNAFDLQ
ERLGFVSRAPRWAIAHKFPAQEALTVLHDVEFQVGRTGAITPVAKLQPIFVGGVTVSNAT
LHNKDEIERLGIRVGDTVIVRRAGDVIPQIVSIVESKRPQDAREIKFPTACPVCGSDVES
VEGEAAIRCTGGLVCEAQRKESIKHFASRQAMDIDGLGDKIVDQLVDNKLVNDVADLYTL
DIPTLAGLERLGAKSAANLVAAIEASKQTSLDKILYALGIREVGRATARNLANHFCTLNK
VMDATQEQLIEVTDVGPVVAHYVVDFFAQANNREVIEKLIAAGVNWPDIEKVDGVKPLEG
TTYVLTGSLESLSRDEAKDKLQALGAKVSGSVSAKTTCVVAGPGAGSKLAKAEKLGLAIL
DEVGLLALLEEHGV
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgtcagacgcagttttagacaagctagaaagccttaaaaaccaaataaattat
cataataaattgtattatgtgttggatgcccctgagctgccagacgccgaatacgataag
ttgtttcaagagcttcaagccattgagcaacaatttcctgaattagttaccgaagactcc
ccaacccagcgtgttggggccgcaccgctagactcttttgctagtatcgagcataagcgc
ccaatgttatcactcgacaacgtatttaacgttgaagagctgtttgcattcgacaagcgt
ataagagacagaataaatgccgatgcatccctagaatattcctgtgaaccgaaattcgac
ggtattgctgcgagcttgctttacgaaaacggccgcttaaaaactgccgcaacccgaggc
gatggaacggttggtgaagatattacccaaaacatgagaacaatcggttccgtgccgctt
aagcttgaaggtaataatattccagcagtgctagaggtgcgcggtgaagtttatatgccc
aaggccggttttctgcgaataaacgaagaggctttagcgaaaaacgaaaagacatttgtt
aacccacgcaatgcggcagcaggtagcttgcggcaattgaacccacaaataaccgctaag
cgccctttggtattttgcgcttataacgtcggggttgttgaaggcggggagttgccagcc
actcattacgaaaccttaacacagctttttgagtggggctttctagtaagcgaagagcgt
cgtatcgccaaaggtatagaagagtgcgaagcttactatcattacttagaggctaagcgc
gaaagcttggcttacgatatcgacggcatagtatttaaagtaaacgcattcgatctgcag
gagcggttgggctttgtttcacgtgctcctcgttgggctatagcgcataaatttcctgcg
caagaagcgctaactgtattgcacgatgtagagttccaagtgggcagaaccggcgctatt
acgcctgttgcaaaactacagcctatttttgttggcggcgttacggtgtccaacgcgact
ttgcataacaaagatgaaatagaacggttgggaatacgcgttggcgatacagttattgtg
cgtcgagcgggtgatgtgattccacaaattgtgtcgattgtagagtccaaacgaccgcag
gatgctcgagaaattaaatttccaacggcatgcccagtatgtggttcagatgtcgagtct
gtagagggcgaggccgcaattaggtgtaccggtggcttggtgtgtgaagcgcagcgcaaa
gaatccataaagcattttgctagccgccaagcgatggatatagatggcttgggcgataaa
atcgtcgaccagcttgtcgacaataaattagttaatgatgtggctgatttatacacactc
gatataccaacacttgccggtctagagcgtttgggcgcaaaatctgcggctaatttagtg
gccgctatagaagcaagcaaacaaacatcgctagataaaatattgtatgccttaggtatt
agagaggttggtagggccactgcgcgcaaccttgctaaccatttttgcacactcaataag
gtaatggatgctacgcaagagcagcttatagaagtgaccgatgtaggcccggtagttgcg
cactatgtggtcgatttctttgcgcaggctaacaaccgagaagtgattgaaaagttgatt
gccgctggcgtaaattggccggatatagaaaaggttgatggtgtaaaaccgctggaaggc
accacttatgtattgactggttcgctggagagcttgtcgcgagacgaagctaaagacaag
cttcaggccttgggtgcaaaggtgtctggcagtgtatcggcaaaaaccacttgtgtggtg
gcaggccctggggcagggtcaaaattggctaaagccgaaaagctaggcttggctatattg
gatgaagtaggtttactcgctctactcgaagagcacggagtctaa
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