Streptococcus dentalis: SM121_06165
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Entry
SM121_06165 CDS
T10629
Symbol
ldcB
Name
(GenBank) LD-carboxypeptidase LdcB/DacB
KO
K07260
zinc D-Ala-D-Ala carboxypeptidase [EC:
3.4.17.14
]
Organism
sden Streptococcus dentalis
Pathway
sden00550
Peptidoglycan biosynthesis
sden01100
Metabolic pathways
sden01502
Vancomycin resistance
sden02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
sden00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SM121_06165 (ldcB)
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SM121_06165 (ldcB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
SM121_06165 (ldcB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sden01002
]
SM121_06165 (ldcB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sden01011
]
SM121_06165 (ldcB)
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
sden01504
]
SM121_06165 (ldcB)
Enzymes [BR:
sden01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.17 Metallocarboxypeptidases
3.4.17.14 zinc D-Ala-D-Ala carboxypeptidase
SM121_06165 (ldcB)
Peptidases and inhibitors [BR:
sden01002
]
Metallo peptidases
Family M15: zinc D-Ala-D-Ala carboxypeptidase family
SM121_06165 (ldcB)
Peptidoglycan biosynthesis and degradation proteins [BR:
sden01011
]
Peptidoglycan biosynthesis and degradation
Carboxypeptidase
SM121_06165 (ldcB)
Antimicrobial resistance genes [BR:
sden01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
SM121_06165 (ldcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VanY
Macoilin
DUF1244
Conotoxin
LPAM_1
New_glue
Serinc
Apis_Csd
Piezo_TM1-24
Motif
Other DBs
NCBI-ProteinID:
WPS53296
UniProt:
A0ABZ0T2U9
LinkDB
All DBs
Position
1265875..1266654
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AA seq
259 aa
AA seq
DB search
MKARFSKFTLVTVALLTLTACSQSQSTSSKSSAKEETKQTQTKFSKETSSTKDTSKETGK
EESSKAGKSDVKVDSGVSYNGSYYSVKGKYGEVMIANKHYPLSPDFNPGEDPEAVSALHE
LIAAMQAEGYPISDQYSGFRSYDTQVGLYQNYVNQDGQEAADRYSARPGYSEHQTGLTFD
LIDTSGNLVTEPGPSKWLLKNAAKYGFVVRYQEGKEKVTGYMPESWHLRYIGKEAQDIAD
SGLSLEEYYGFTGGDYVDK
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcaagattttccaaattcactttggtgacagttgccttgttaaccctgacagct
tgctcccaatctcaatccactagttctaaatcttctgcaaaagaagaaactaaacaaacg
caaaccaagttttccaaagaaacgtcttctacaaaggatacgtcaaaagaaactggcaaa
gaagagtcgtcaaaagctggcaagtcagatgtgaaagtggactctggtgtcagctataat
ggttcttactatagtgtaaaagggaaatatggtgaggtcatgatcgccaacaaacattat
cccttgtcgcctgactttaacccaggtgaagatcctgaagctgtttcagcccttcatgaa
ttgatcgcagccatgcaggcagagggttatccaattagtgatcaatacagtggttttcgt
agctacgacacccaagttggcctctatcaaaactatgtcaatcaagatggtcaggaagca
gcagatcgttattccgcaagaccgggttatagtgaacaccagacaggtttgacctttgat
ttgatcgataccagtggtaatctggtgacagaacctggaccaagtaagtggttgctcaag
aatgccgctaaatatggctttgtggttcgttaccaagaaggaaaagaaaaagtgacaggc
tacatgccagaaagctggcatctccgctatatcggaaaagaagcacaagatatcgcggac
tcaggcttgagtctggaagaatactatggcttcaccggtggcgattacgttgataaataa
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