Streptococcus dentalis: SM121_07725
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Entry
SM121_07725 CDS
T10629
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sden Streptococcus dentalis
Pathway
sden03030
DNA replication
sden03410
Base excision repair
sden03420
Nucleotide excision repair
sden03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sden00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SM121_07725 (ligA)
03410 Base excision repair
SM121_07725 (ligA)
03420 Nucleotide excision repair
SM121_07725 (ligA)
03430 Mismatch repair
SM121_07725 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sden03032
]
SM121_07725 (ligA)
03400 DNA repair and recombination proteins [BR:
sden03400
]
SM121_07725 (ligA)
Enzymes [BR:
sden01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SM121_07725 (ligA)
DNA replication proteins [BR:
sden03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SM121_07725 (ligA)
DNA repair and recombination proteins [BR:
sden03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SM121_07725 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SM121_07725 (ligA)
MMR (mismatch excision repair)
DNA ligase
SM121_07725 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SM121_07725 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DUF1889
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WPS53592
UniProt:
A0ABZ0T174
LinkDB
All DBs
Position
complement(1576530..1578488)
Genome browser
AA seq
652 aa
AA seq
DB search
MKTRMKELVELLNRYAYEYYTKDAPSVSDSEYDQLYRELVELETAHPDEILPESPTHRVG
GVVLKGFTKYQHQYPLYSLQDAFSREELETFDQRVRKEFPSISYVCELKIDGLSISLTYE
NGVLVTGATRGDGSVGEDITENLKRVKDIPLVLPEPMNITVRGECYMPRASFDRVNQIRQ
ENGEPEFANPRNAAAGTLRQLDTTIVAKRNLATFLYQEVSPTDQSSQEGVLEKLARLGFV
VNQERVLAEDMEQIWDFIQKVAQLRDDLPYDIDGIVIKVNDLAVQEELGFTVKAPKWAVA
YKFPAEEKEAKILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIHQD
DTVIVYKAGDIIPAVLRVVKDKRVSDQALAIPTHCPSCQSELLHFEDEVALRCINPLCPA
QIKEGLNHFASRDAMNITGLGPAVVEKLFAAQLVEDVAGIYRLTVEDLLTLEGFKEKSAE
KLHEAIQASKENSAEKLLFGLGIRHVGSKVSQILLQEFHDLDQLATADPERIASIDSLGM
VVAESLKRYFAQEGSKRLLQELKEAGVNMTYLGEKVAADAALSGMTVVLTGKLERLTRSE
AKAKLESLGAKVTGSVSKKTDLVVAGSDAGSKLTKAQELGIQVEDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccagaatgaaagaattagtggaattactcaatcgttatgcttatgagtattac
acaaaagacgctccatcagtttcagatagtgagtatgatcaattatatcgggagttggtg
gaactagaaactgctcatccagatgagatcttaccagagagtccaactcaccgtgtaggt
ggggtggttttaaaaggctttaccaaataccagcaccagtatcccctttatagtttgcag
gatgctttttcgcgtgaagaattagaaacctttgatcagcgtgtccgtaaggaatttcct
tccatcagctatgtatgtgagctgaagatcgatggcttgtccatttccctcacctatgaa
aatggtgtccttgtaacgggggcaacacgtggggatggttctgtcggtgaggatattaca
gagaacctcaagagggtcaaggacattcctttggttttaccagagccaatgaacattact
gttcgaggcgagtgctacatgccacgggcttcctttgatcgggtcaatcagatccgtcaa
gaaaacggcgagccggagtttgctaatccgcggaatgctgctgcaggaacacttcgccaa
ttggatacgacaatcgtggccaagcgaaatctcgcaaccttcttgtatcaagaagtgagt
ccaactgatcaaagcagtcaggaaggcgtgcttgagaaattagcccgcttaggctttgtc
gtgaaccaagagcgagtgctggctgaggatatggagcaaatttgggactttatccaaaag
gtagctcagcttcgagacgatcttccctacgatatcgatgggatcgtcatcaaggtcaat
gacctagctgttcaagaagaactaggctttaccgtaaaagcccctaaatgggctgtcgcc
tataagtttccagctgaagaaaaagaagcgaaaatcctatcggtggattggacggttgga
cggaccggagttgtgaccccaactgccaatctaactccagtccagctagcaggaactacc
gttagtcgggcaaccttgcacaatgtggactatattgctgaaaaagatattcatcaggat
gataccgtcatcgtctacaaggcgggtgatatcattcctgcggtcttgcgtgttgttaaa
gataagcgagtctctgatcaagcattagccattccaactcattgtccgagctgccagagt
gagttgcttcatttcgaggatgaggtagcccttcgctgtatcaatccactctgtccagcg
cagatcaaggaaggattgaaccactttgcaagtcgggatgctatgaatatcacaggcttg
ggtccagctgttgtagagaaactcttcgccgctcagttggtagaggatgtagctgggatc
tatcgtctgacagtcgaggatctattgaccttagaaggctttaaagaaaaatctgctgaa
aaactccatgaagccattcaagcttcaaaagagaattcagctgagaagttactctttggt
ttggggatccgccatgtcggtagcaaggttagtcaaatcttgctccaagaattccatgac
ctcgatcaattggctacagctgatccagaacgaattgccagcattgacagtctcggtatg
gtcgtggctgaaagcctcaagcgttatttcgcacaagaaggatccaagcgcctattgcaa
gagcttaaagaagctggtgtcaatatgacttatcttggtgaaaaagtcgctgctgatgcg
gccctatcaggaatgacagtcgttttgactgggaagctagagcgactcacgcgttcagaa
gccaaggcaaaattagaaagtctgggcgctaaggtaactggatcggtttccaaaaaaaca
gatttggtcgttgcaggtagtgacgctggtagcaagttaaccaaagcacaagaattagga
atccaggtagaagatgaggcctggcttgaaagtttatag
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