Shewanella decolorationis: D0436_09030
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Entry
D0436_09030 CDS
T09167
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo03030
DNA replication
sdeo03410
Base excision repair
sdeo03420
Nucleotide excision repair
sdeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D0436_09030 (ligA)
03410 Base excision repair
D0436_09030 (ligA)
03420 Nucleotide excision repair
D0436_09030 (ligA)
03430 Mismatch repair
D0436_09030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdeo03032
]
D0436_09030 (ligA)
03400 DNA repair and recombination proteins [BR:
sdeo03400
]
D0436_09030 (ligA)
Enzymes [BR:
sdeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D0436_09030 (ligA)
DNA replication proteins [BR:
sdeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D0436_09030 (ligA)
DNA repair and recombination proteins [BR:
sdeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D0436_09030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D0436_09030 (ligA)
MMR (mismatch excision repair)
DNA ligase
D0436_09030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D0436_09030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QDZ93204
UniProt:
A0A5B8R2Z1
LinkDB
All DBs
Position
complement(3130969..3133038)
Genome browser
AA seq
689 aa
AA seq
DB search
MQDIQLDKRLSELLSQAVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQQ
LKQLEAEYPQFVAADSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDR
VGQVSFCCEPKLDGLAVSILYRNGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGDNY
PELVEVRGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYA
YALGVVEPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADLPF
EIDGVVMKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVAR
LKPVFVGGVTVSNATLHNADEIARLGVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAI
AFPQHCPVCGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQL
IDKELVQSPADLFKLTASMMTMLDRMGMKSATNLALAIEAAKTTTLPRFLYALGIREVGE
ATAANLATYFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVN
WPAIAAPSADEQPLKGQTWVLTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEA
AGSKLAKAQELGVKVIGEDELLALLAANT
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacattcaactcgataaacgcctatctgaactgctttctcaagctgtcacgcca
cacaatgcgcagccattgatgcaggcgctctgccaatctctgaatgaacacaatattcgt
tactatgtcgatgatgcgccaagcattaccgactccgaatacgacagattaatgcagcag
ctaaaacaactagaggccgagtatcctcagtttgttgctgccgactcgcccacccaaaga
gtcggcggcatggcgctggccaagtttgaacaaattactcaccttaaacccatgttaagt
ctcgataatgccttcgatgaggcagactttagcgcgtttcataaacgtgtcagcgacaga
gttggccaagtgagtttttgctgtgagcctaagctcgatggtttagcggtgagtattttg
tatcgcaatggtgtgcttgagcgcgccgcgactcggggtgatggttccgtgggcgaagat
attaccgaaaacgttaaaaccattaagtcgattccgctcaaactgcgtggtgacaactat
cccgaattggtcgaagtgcgcggtgaagcctttatgcccaaggcggcatttgaggcgcta
aatgagcgtgcgcgcttaaaggatgaaaaactgttcgtcaatccgcgtaatgcggctgcg
ggcagcttacgtcagctcgatagtaaaattaccgcgtcacgggcgctgtcgttttatgcc
tatgctttaggtgtggtggagccgacgtcccacgaattagctaagacccactacgagcaa
ttgcagcaacttaaatcttggggactgccagtcagtagcgagatcaaagtctgcgacgaa
ctcagccaagtctttgcctactatcaagatatattaactcgccgcgccgacttacccttt
gagatcgatggcgtggtgatgaaggttaacgatatcgcccagcagcaaactttagggttt
gtagctaaatccccccgttgggcgattgcctataagtttcccgcgcaggaagaaatgacg
ctgctcgaaggcgtagattttcaggtcggccgcactggcgcagtgactccggttgcgcgc
ttaaaacctgtgtttgtcggcggtgtgacggtatcgaacgccaccttacacaatgccgat
gaaatcgctcgtttaggtgtgatggtgggtgatactgtgattatccgccgcgccggcgat
gtgatcccgcaaattgtcgccatagtgccagagcgccgcccagaagatgctaaggcgatt
gcctttccgcaacattgccccgtttgcggcagtttagttgagcgattagaaggtgaagcc
gtggcccgttgtagtggcggcttattctgtgaggcgcagcgtaaagaggcgatcaagcat
tttgcctcccgcaaggcattagatatcgacggcatgggcgataaaatcgtcgagcaattg
attgataaggagctggttcaaagccctgcggacttatttaaactcaccgcatctatgatg
accatgctcgaccgtatgggaatgaagtcggccaccaatctcgcgctggcgattgaagcg
gctaaaaccacgactttgccacgtttcctctatgctttaggcattcgtgaggtgggggag
gccacggcggcgaacctggcgacttactttggtagcctagaggcgctgcgcgtggctacc
attgagcaacttattcaagttgaagatattggtgaagtggttgcccagcatgtggcgcat
ttctttgcccagccccataacctagaagtgatcgatgctttgattgcggctggcgtcaac
tggcctgcaattgcagcgccaagcgccgatgagcagccattgaaggggcagacttgggtg
ctaacaggcaccttaaatcaactcaaccgtaacgatgctaaggcgcaattacaggccttg
ggtgccaaagtggcgggcagtgtctcgaaaaataccgattgcttagtcgcgggtgaagcg
gcgggttctaagcttgccaaagcgcaagagcttggcgtgaaagtgattggtgaagacgaa
ttgctcgcactgcttgctgccaatacctaa
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