Shewanella decolorationis: D0436_09460
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Entry
D0436_09460 CDS
T09167
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo01501
beta-Lactam resistance
sdeo01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
D0436_09460
01503 Cationic antimicrobial peptide (CAMP) resistance
D0436_09460
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sdeo02000
]
D0436_09460
01504 Antimicrobial resistance genes [BR:
sdeo01504
]
D0436_09460
Transporters [BR:
sdeo02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
D0436_09460
Antimicrobial resistance genes [BR:
sdeo01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
D0436_09460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
DUF6286
Motif
Other DBs
NCBI-ProteinID:
QDZ90678
UniProt:
A0A5B8QXD5
LinkDB
All DBs
Position
complement(2070498..2073761)
Genome browser
AA seq
1087 aa
AA seq
DB search
MSIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVE
QLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIALPLD
VKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGVAAVRLSGG
LEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSLEE
LGQVIVYRDAQTLVRLFEVATITDAFKERSDITRIGSQESIELAIYKEGDANTVAVAKKL
RDELVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSILSMLVIYLFLRNIIPTLI
ISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEGMSKL
DAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVALTS
IPMLASREGFTALPELIKKAPKEKPTTKLGKLKHYSATVFSFPIVLLFSYLPSALLTLAL
VISRFFSWLLGLVMRPLSSGFNFVYHAIESVYHKLLAIALRKQVATLLLTIGITGACISL
LPRLGMELIPPMNQGEFYVEILLPPGTAVGETDKVLQQLAMSIKDRPEVKHAYSQAGSGG
LMTSDTARGGENWGRLQVVLNDHTAYHQVTQVLRNTARRIPELEAKIEQPELFSFKTPLE
IELTGYDLHLLKRSADSLVKALSASERFADVNTSLRDGQPELSIRFDHARLAALGMDAPT
VANRIAQRVGGTVASQYTVRDRKIDILVRSELNERDQISDIDALIINPNSPQPIALSAVA
EVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVAEAQQILSAQVLPASVQARFGGQNE
EMEHSFQSLKIALILAVFLVYLVMASQFESLLHPLLILFAVPMALAGSVLGLYITQTHLS
VVVFIGLIMLAGIVVNNAIVLVDRINQLRTEGVDKLEAIKVAAKSRLRPIMMTTLTTTLG
LLPMALGLGDGSEVRAPMAITVIFGLSLSTLLTLIVIPVLYALFDRKEFTHTATEQDNTA
ETAEARL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcatcagcacctctgttaaacggccagtcacggtatggatgttcatgctggcc
attatgttattcggtatggtggggttttcgcgcttagcggtaaaactcctacccgattta
agctaccccaccttaaccattcgaaccatgtacgatggtgcggcgcccgttgaagtagaa
caactggtctcaaaacccattgaagaagccgtcggcgtggtgaaaggcttacgtaagata
agctctatctcccgctctggcatgtccgatgtagtgctcgagtttgaatggggcaccact
atggatatggcgagcctcgatgtgcgtgaaaaactcgacactatcgccctgcctctggat
gttaaaaagccattattgctgcgctttaaccccaaccttgaccctatcatgcgtctcgcg
ctgtcggtgcctaatgcgtctgaggctgaactcaagcagatgcgtacctatgccgaggaa
gaacttaaacgccgtttagaagccctctcaggtgtagctgcggtacgtttatccggtggc
ttagagcaggaagtgcatattcagctcaatcaggaaaagttatcccagctcaatttgaat
gccgatgacattaaacgccgcatcaacgaggaaaacatcaacttatctgcggggaaagtg
atccaaggcgaccgcgaatatctggtgcgtacccttaaccaattcaattcattggaagaa
ttgggacaagtgatcgtctatcgcgacgcacagaccttagtacgtctatttgaagttgcc
accattaccgatgcctttaaagagcgcagcgacatcactcgtatcggcagccaagagtcg
attgaactggctatctataaggaaggcgatgccaacacggtcgcggtggctaaaaagctg
cgcgatgagctagtcaaaatcaaccaagatcctaagcaaaacaaactggaagtgatttac
gatcagtccgagtttattgagagtgccgttagcgaagtcacctcgtccgcgttgatgggc
agtattttgtctatgctggtgatttacctgttcctgcgcaatattattccaacgctgatc
atctctatctccatccccttctcggtgattgccacctttaatatgatgtactttgctgat
atcagcttaaacatcatgtcattaggcggtattgcactcgccattggtctcttggttgac
aacgccattgtggtactggagaacatcgaccgctgccgcagcgaaggtatgagcaagtta
gatgccgcagtgactggaaccaaagaagtggcgggcgcgattttcgcctccaccctaacc
acactcgcggtgtttgtccccttggtttttgtcgatggaattgccggtgccctgttctcg
gatcaagccctcacagtgacctttgccctgctcgcatcactcctggtggctttaacttcg
attccaatgctggcctcccgcgaaggctttacagcactgccagaactcatcaagaaagcc
ccgaaggaaaaacccactactaagctcggtaagttaaaacactacagcgcgacggtattt
tccttcccgattgtgttgctctttagctacttaccgagtgcattgctgactttagcgtta
gtcattagccgcttcttctcttggctgcttgggttagtgatgcgtccgctgagcagtggt
tttaactttgtttaccacgctatcgagtcggtttatcacaaactgctggcgatagcgctg
cgtaaacaagtcgccaccttgttactgaccattgggatcacaggtgcctgtattagcctg
ctgccccgtcttggcatggaactcatcccaccgatgaatcaaggggagttttatgtggag
atcctgctgcctcctggcacagcggtcggtgaaaccgataaagtgctgcaacaactcgcg
atgtcgattaaagacaggccggaagtcaaacatgcctacagccaagcgggcagtggcggt
ctcatgacctctgataccgcccgtggcggcgaaaactgggggcgtttacaggtcgttctg
aacgatcacacggcttatcaccaagtaacgcaagtgctgcgtaacaccgcgcgccgcatc
cctgagctggaagccaaaatcgagcaacctgaactctttagctttaaaaccccattggaa
attgagctaacgggttacgatttacacttgctcaaacgcagtgccgatagtctggttaag
gcgctttccgcctccgagcgctttgccgatgtgaatactagcctgcgtgatggtcagcca
gaactcagcattcgcttcgaccatgctcgcttagccgccttaggcatggatgcgcccacg
gtcgccaatcgcatcgcccagcgcgttgggggcacggtcgccagtcaatacacagtacgt
gaccgcaagattgatattttagtgcgtagcgaactgaatgagcgggatcaaatcagtgat
atcgatgcgctaatcatcaaccccaacagcccacaaccgattgccctgagcgccgtggcc
gaagtgtcattgcaattaggcccatcggcgattaaccgcatcagccaacaacgtgtggcc
ttagtgtcggccaaccttgcctatggcgacttaagtgacgctgtggccgaagcgcagcaa
attttgtcggcacaagtgttgcccgcctcggttcaagcgcgctttggtgggcaaaatgag
gaaatggagcattcattccaatcactgaagattgcattaatcctagcggtttttctggtg
tacttagtgatggcgagtcagttcgaatcgctgctgcatccgctgctgatcctattcgct
gtgccgatggcgctggcaggtagcgtgctggggctctatatcacccaaacccatttgagt
gtggtggtgtttatcggccttatcatgctcgcggggattgtggttaacaacgccatcgta
ctcgtcgataggattaatcagctgcgcaccgaaggcgtggacaagctcgaggcgattaag
gtcgcagccaaatcccgtctgcgcccgattatgatgaccaccttaaccaccacattaggt
ttactgcctatggccttaggtttaggcgatggctcagaggttcgcgcaccgatggcgatt
accgtgatctttggtctgagcctctcaaccctattaaccctgattgtgattcctgtgctc
tatgccctgtttgaccgtaaagagtttacgcataccgccacagagcaagataacacagca
gaaactgcggaggctcgcctatga
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