Staphylococcus devriesei: Q2T90_02635
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Entry
Q2T90_02635 CDS
T09366
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdev
Staphylococcus devriesei
Pathway
sdev03030
DNA replication
sdev03410
Base excision repair
sdev03420
Nucleotide excision repair
sdev03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q2T90_02635 (ligA)
03410 Base excision repair
Q2T90_02635 (ligA)
03420 Nucleotide excision repair
Q2T90_02635 (ligA)
03430 Mismatch repair
Q2T90_02635 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdev03032
]
Q2T90_02635 (ligA)
03400 DNA repair and recombination proteins [BR:
sdev03400
]
Q2T90_02635 (ligA)
Enzymes [BR:
sdev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q2T90_02635 (ligA)
DNA replication proteins [BR:
sdev03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q2T90_02635 (ligA)
DNA repair and recombination proteins [BR:
sdev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q2T90_02635 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q2T90_02635 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q2T90_02635 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q2T90_02635 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
Zn_ribbon_NUD
PTCB-BRCT
RNA_ligase
HHH
zf-IS66
17kDa_Anti_2
DUF7575
Motif
Other DBs
NCBI-ProteinID:
WKU13848
LinkDB
All DBs
Position
complement(517999..520002)
Genome browser
AA seq
667 aa
AA seq
DB search
MENIQNRVNELHALLNQYSYEYYVQDNPSVPDSEYDKLLRELIDIEEAHPEYKTNDSPTV
RVGGEAQSSFEKVDHDTPMLSLGNAFNEAELRRFDERIHDHTDNVEYMCELKIDGLAVSL
KYVDGRFVQGLTRGNGTTGEDITENLRTIHAIPLKIKEPLNFEVRGEAYMPRSSFMALNE
EKEKNEEQPFANPRNGAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFDATTQSGALDELD
RLGFKTNQERERVKDIEGVLKYIEKWTEQREQLPYDIDGIVIKVNDLDQQDEIGYTQKSP
RWAIAYKFPAEEVVTTLQDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDLIRER
DIRIGDSVVVKKAGDIIPEVVRSVIERRPDDTRPYHMPTHCPSCGHELVRIEGEVALRCI
NPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYHNHVIKDVADIFYLTEDDLLPLERM
GAKKVENLLTAIQASKANSLEHLLFGLGIRHLGVKASRVLAEKYETMDRLLEVTEEELVS
IHDIGDKLAQSVVTYLENEDIQALIEKLKTKNVNMVYNGVKTSEIEGHPDFQDKTIVLTG
KLQQMTRKEASAWLEMQGANVTSSVTKSTDLVIVGEDAGSKLTKAEKFGTEVWTEEQFIT
KKDEISN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggagaacatccaaaaccgagtgaatgagttgcatgctttattaaatcaatatagttat
gaatactatgtgcaagataatccttctgtaccagatagtgaatacgataaattattacgt
gaattaattgatattgaagaagcgcatccagaatataaaacaaatgattcgccaacagtg
cgtgtgggtggagaagcacaatcctcatttgaaaaagtcgaccatgatacacctatgcta
agtttaggtaatgctttcaatgaagccgaattacgtcgattcgatgaacgtatacatgat
catacagataatgtggaatacatgtgtgaattaaaaattgacgggttagctgtgtctcta
aagtatgtggatggtcgcttcgtacaaggattgacacgtggaaatggtacgaccggcgaa
gatataactgaaaatttacgcactattcatgcgatcccattgaaaattaaagaaccatta
aactttgaagtacgtggcgaagcctatatgccacgtagttcatttatggctttaaacgaa
gaaaaagaaaaaaatgaagaacaaccatttgctaatccacgtaatggtgctgcaggttct
ttaagacaattagaccctaaattagcagccaagcgtaaattaagtgtctttttatatagt
gtaaatgattttacagattttgatgctactactcaaagtggcgctttagatgaattagat
cgtcttggttttaaaacaaaccaggaacgtgaacgcgttaaagatattgagggtgtttta
aaatatattgaaaagtggacagaacaacgtgaacaacttccatatgatattgatggcatt
gtaataaaagttaatgatttagaccagcaagatgaaattggttatactcagaaatcgcca
agatgggccattgcttacaaatttcctgctgaagaagtggtaaccactttacaagatatc
gaattaagtataggccgcacaggtgtcgttacaccaacagctattcttgaaccagtgcgt
gtagcaggaactacagtctctagagcctctttacataatgaagatttgattagagagcgt
gatattagaataggggatagtgtagttgttaaaaaggctggagatattattccagaagtc
gttagaagtgtaattgaacgacgaccagacgatactcgaccgtatcatatgccaactcat
tgtccaagttgtggtcacgaacttgtacgcattgaaggtgaagtagctctacgttgtatc
aaccctaaatgtcaggcgcaacttgtagaaggccttatccactttgtatcacgtcaagca
atgaatattgatggtctaggcactaaaatcattcaacaactctatcataatcatgtaatt
aaagatgtagcagatattttctacctaactgaagatgatttattaccgttagaacgtatg
ggtgcaaaaaaggttgagaatctactcactgcgatacaggcttctaaagctaattcatta
gaacatttattgtttggtttaggcattcgccacttaggtgttaaagcaagccgagttctc
gctgagaaatatgaaactatggatcgtttgcttgaagttactgaagaagagttagtaagc
attcatgatataggagataaacttgcccaatctgtagttacttatttggaaaatgaagat
attcaagctttaattgaaaaattgaaaactaagaacgttaacatggtatataatggtgtt
aaaacaagtgagatagaagggcatcctgattttcaagataaaacaatagtcctaacagga
aagttacaacaaatgactcgaaaagaagcttcagcttggttagagatgcaaggcgctaac
gtaacaagtagtgtaacaaaaagtacggatctagttattgtaggtgaagatgcgggttca
aaactaactaaagctgaaaagtttggtactgaagtttggacagaagaacagtttataact
aagaaagatgaaatatcaaattag
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