Steroidobacter denitrificans: ACG33_07015
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Entry
ACG33_07015 CDS
T04296
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdf
Steroidobacter denitrificans
Pathway
sdf03030
DNA replication
sdf03410
Base excision repair
sdf03420
Nucleotide excision repair
sdf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACG33_07015 (ligA)
03410 Base excision repair
ACG33_07015 (ligA)
03420 Nucleotide excision repair
ACG33_07015 (ligA)
03430 Mismatch repair
ACG33_07015 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdf03032
]
ACG33_07015 (ligA)
03400 DNA repair and recombination proteins [BR:
sdf03400
]
ACG33_07015 (ligA)
Enzymes [BR:
sdf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACG33_07015 (ligA)
DNA replication proteins [BR:
sdf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACG33_07015 (ligA)
DNA repair and recombination proteins [BR:
sdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACG33_07015 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACG33_07015 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACG33_07015 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACG33_07015 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
BRCT_2
Zn_ribbon_NUD
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMN46850
UniProt:
A0A127FB74
LinkDB
All DBs
Position
1558608..1560665
Genome browser
AA seq
685 aa
AA seq
DB search
MPFSKSPSARMLARADELRRRIEYHNYRYYVLDDPEISDAQYDRLMQSLRALEAEDPQLI
TPDSPTQRVGAHPVGQLAEVTHQVPMLSLDNAFTEEDVIAFDRRLRERLETSEEIEYAAE
PKLDGLAVSFLYESGRLVQAATRGDGMRGEDVTHSVRTIKAVPIALRAGAPLRLEVRGEV
FMPVQGFKDMNARALAQGEKIFVNPRNAAAGSIRQLDPQLAAARPLDVFFYGIGQSEGWT
PPARHYELLQRLREFGLKISPLVKQVRGVQGVLAYYREMAALRSSLAYEIDGVVYKVDCY
AQQRELGFVARAPRWAIAHKFPAHEENTVVRAVEFQVGRTGALTPVARLAPVFVGGVTVS
NATLHNMDEVRRKDVRIGDTVVVRRAGDVIPEVVKVILERRPSTAQEVALPTICPVCGSD
VERAEGEVIARCSGGLYCAAQRKEALRHFAARRALDIDGLGSKIIDQLIDTPLIDGAPVR
SPADLFRLTAPQLASLERMGEKSAANLIAALERSKSTTLARFLYALGIRDVGEATAAALA
EHFGSLEALQRASVEDIQEVPDVGPVVASHVHTFLQQMHNRAVIEALREQGVHWPVQTPR
RPSAGEGALTGRSFVLTGTLTSMSRDQASARIVALGGKVSSSVSKKTSYVVAGAEPGSKL
QKARELGVEVLDEAAFLALLGRVIG
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcctttttcaaaatcccccagtgcgcggatgcttgcgcgtgccgacgaattgcggcgc
cggatcgagtatcacaattatcgctactacgtacttgatgatccggaaatctcggatgcg
cagtacgaccggctgatgcagtcgctgcgcgccttggaggccgaggatccgcagctgatt
acgcctgattcgcccacccagcgggtaggtgctcatcctgtcggtcaactggcggaggtg
acgcatcaggtgccgatgctgtcgctggacaacgccttcacggaggaggatgtgattgca
ttcgaccggcggctccgcgagcggctggaaaccagcgaggagatcgaatatgcagcggaa
cccaagctcgacggtctagcggtaagttttctttacgagtccggtcgcctggtgcaagcc
gccacacgcggcgatggtatgcgcggcgaggatgtcacccatagcgtgcgcacgatcaag
gccgtgccgatcgcgctgcgcgccggcgcgccgctacgcttggaggtgcgtggcgaggta
ttcatgccggtgcagggtttcaaggacatgaatgcacgggcgctggcgcagggcgagaag
atctttgtcaatccgcgcaatgccgcggcaggcagcatccgccagctcgatccgcagttg
gccgccgcccgtccgctggatgtattcttttatggtatcgggcaaagcgaaggctggacg
ccgccggcgcgccactacgaactcctgcagcgactgcgggagttcggattgaagatttcg
ccgctggtgaagcaagtgcgcggtgtacagggcgtattggcctactaccgcgaaatggcg
gcgcttcgcagcagcctggcctacgaaatcgatggcgtggtctacaaggtcgattgctat
gcgcagcagcgggagctgggtttcgtggcgcgagcgccacgctgggcgatcgcgcacaag
tttccggcccacgaggaaaacaccgtggtgcgtgccgtggaattccaggtggggcgcacc
ggtgcgctgacaccggtggcgcgcctggcgccggtgtttgtcggcggcgttacagtcagc
aacgcgaccttgcacaacatggacgaggtgcggcgcaaggatgtacgtatcggcgatacg
gtagtggtccgccgggccggagacgtgattccggaagtggtgaaggtcatcctcgaacgc
cgtccatccacggcgcaggaagtggcattgccgacaatttgtccggtgtgcggttcggac
gtggaacgcgccgagggcgaagtgatcgcgcgctgctcaggcggcttgtactgtgccgcc
cagcgcaaggaagccctgcggcatttcgccgcgcggcgcgccttggatatcgatggcttg
ggcagcaagatcatcgatcagctgatcgacacaccgctgatcgatggcgctccggtgcgc
agtccggcggacttgttcaggctcacggcgccgcaacttgcctctttggagcgtatggga
gagaaatcggcggcgaacttgatcgcggcgttggagcgcagcaagtcgacgacactggcg
cgcttcctgtatgcactcggtatccgtgacgtaggggaggcgacggcggccgccttggcg
gagcatttcggatcattggaggctttgcagcgggccagcgtggaggatatccaggaagtg
cccgatgtcggtccggtggtcgcgagccatgttcataccttcttgcagcagatgcataac
cgcgcggtcatcgaggccctgcgtgaacagggagtccactggcccgtacagacgccgcgc
cgcccctccgcgggggagggagccctgacaggccgcagcttcgtactcaccggtaccttg
acgagcatgagccgcgatcaggcaagcgcgcggatcgtggccttgggtggcaaggtgtcg
agcagcgtgtcgaaaaagacaagctatgtggtggcaggtgcagagccgggttcgaagctg
cagaaagcgcgggagttgggggtggaggtgctggacgaggcggcgttcctggcgttgctg
ggccgagtgatcggttga
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