Streptococcus dysgalactiae subsp. equisimilis ATCC 12394: SDE12394_03845
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Entry
SDE12394_03845 CDS
T02017
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdg
Streptococcus dysgalactiae subsp. equisimilis ATCC 12394
Pathway
sdg03030
DNA replication
sdg03410
Base excision repair
sdg03420
Nucleotide excision repair
sdg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SDE12394_03845 (ligA)
03410 Base excision repair
SDE12394_03845 (ligA)
03420 Nucleotide excision repair
SDE12394_03845 (ligA)
03430 Mismatch repair
SDE12394_03845 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdg03032
]
SDE12394_03845 (ligA)
03400 DNA repair and recombination proteins [BR:
sdg03400
]
SDE12394_03845 (ligA)
Enzymes [BR:
sdg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SDE12394_03845 (ligA)
DNA replication proteins [BR:
sdg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SDE12394_03845 (ligA)
DNA repair and recombination proteins [BR:
sdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SDE12394_03845 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SDE12394_03845 (ligA)
MMR (mismatch excision repair)
DNA ligase
SDE12394_03845 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SDE12394_03845 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Med20
Relaxase_C
Motif
Other DBs
NCBI-ProteinID:
ADX24281
LinkDB
All DBs
Position
737289..739247
Genome browser
AA seq
652 aa
AA seq
DB search
MKKRIRELTELLNRYRQEYYTNDSPSVSDSEYDKLYRELVDLENQYPEHVLQDSPTQNVG
GTLLTGFDKYQHQYPLFSLQDAFSREELDAFDKRVKSEFPDATYLAELKIDGLSISLSYE
NGQLQVGATRGDGSVGENITENLKQIKDIPQVLPQPLTITVRGEAYMSRQSFKAINEERQ
ENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQEASPTTRSQQDHVLKALADLGFS
VNQRHHLSSSMDEIWDFIQTVEAERDQLAYDIDGIVIKVNNLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLKPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLRVVSDKRQEQVPMWIPSQCPSCQSDLVHFEDEVALRCINPLCPS
LIQRGLEHFASRNAMNIAGLGPAVVEKLFLAGLVHDVADIYKLTKEDLLHLDGIKEKSAE
KLLAAIETSKSNSAEKLLFGLGIRHIGAKASRLILETCGDIEHLLTVREEDIATIDGLGM
VIAKSLVQYFQQDSAILLVEELKNAGVNLAYLGQKIDSNAELFGLTVVLTGKLEKMTRND
AKAKLETLGAKVTGSVSKKTDLVIAGSDAGSKLEKAQALGIRIEGEEWLEQL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacgcataagagaattgacggaattgcttaaccgttatcgtcaagaatactat
accaatgattccccttctgtttctgatagtgagtacgataagctttatcgtgagctagtg
gatcttgaaaaccaataccctgagcatgtcttacaagatagcccaactcagaatgtcgga
ggaacccttctcaccggttttgacaaataccagcaccagtatccgctatttagtttgcag
gatgctttttcgcgtgaggaattagatgcctttgacaagcgggttaaatcggaatttcct
gatgccacttatctagcagagctaaaaatcgacggcttatccatctctttaagttatgaa
aatggccaattacaggtgggagctacccgcggagatggtagtgttggtgaaaacattaca
gagaatcttaaacagattaaagatattcctcaagtattgcctcaacccctgaccataact
gttcgaggagaggcctacatgtctcggcaatcctttaaagcaattaatgaagagagacag
gaaaacggtgaaacagaatttgccaatcctagaaatgctgctgcgggtaccttgaggcaa
ttagatacggcggtagtggccaagcgtcaattggctacttttctctatcaagaagctagt
cccacaaccagaagtcagcaagatcatgtcttgaaagcattagccgatttgggcttctca
gttaatcagcgtcaccatctgtcatcctctatggatgagatttgggattttattcaaact
gtggaggcagaacgcgatcaattggcttatgatattgacggtattgtcatcaaagtgaat
aacttagccatgcaagaagagttgggatttacggttaaagcgccacgttgggcgattgcc
tacaagtttccagcagaagaaaaagaggcagaaatcctttcggttgactggacagttggt
agaacaggtgtggttaccccaacagcaaacttgaaaccagttcaattagctggaacaacg
gtcagcagggctaccttgcataacgtcgattatattgcggaaaaagatattcgaattgga
gatactgtaattgtctataaagcgggggatattattcctgctgtcttgcgcgtggtttct
gacaagcgacaggaacaggtgcctatgtggattccaagtcaatgcccatcttgtcagagt
gatttggtgcattttgaggatgaagtagctctacgctgtatcaatcctttgtgtccgagt
ttgattcagcgagggttggaacattttgccagtcgaaatgccatgaatattgctgggctt
gggcctgctgttgtggaaaaactctttttagcagggcttgttcacgatgtggcagatatt
tacaagcttactaaggaagatcttctacatctagatggtatcaaagaaaagtcggccgaa
aaattgctagcagctattgaaacgtccaaatcaaattcagccgagaaattgttatttggt
ttaggcattcgtcacattggtgctaaggctagtcgtttaattttggaaacttgtggagac
attgagcatctcttaacggttagagaagaagacattgcgactattgatggtctgggcatg
gtaattgctaaatcattggttcaatattttcaacaagattctgccattcttttagtagaa
gaactaaagaatgctggggttaacttagcttatttaggacagaagattgatagtaatgca
gaattatttggcttaacggttgttttaacgggcaagttggagaaaatgactcgcaacgat
gcaaaagcaaaattagaaaccttaggtgctaaagtgactggcagtgtgtctaagaaaaca
gacttggtgattgctggaagtgatgcagggtctaagttggagaaagcgcaggctttaggc
attcgaatcgagggtgaagagtggctagagcagctttaa
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