Sphingomonas daechungensis: H9L15_04070
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Entry
H9L15_04070 CDS
T07072
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdh
Sphingomonas daechungensis
Pathway
sdh03030
DNA replication
sdh03410
Base excision repair
sdh03420
Nucleotide excision repair
sdh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L15_04070 (ligA)
03410 Base excision repair
H9L15_04070 (ligA)
03420 Nucleotide excision repair
H9L15_04070 (ligA)
03430 Mismatch repair
H9L15_04070 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdh03032
]
H9L15_04070 (ligA)
03400 DNA repair and recombination proteins [BR:
sdh03400
]
H9L15_04070 (ligA)
Enzymes [BR:
sdh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9L15_04070 (ligA)
DNA replication proteins [BR:
sdh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9L15_04070 (ligA)
DNA repair and recombination proteins [BR:
sdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9L15_04070 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9L15_04070 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9L15_04070 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9L15_04070 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
QNP43827
UniProt:
A0ABX6T4I5
LinkDB
All DBs
Position
complement(776353..778389)
Genome browser
AA seq
678 aa
AA seq
DB search
MADSIGEAEAANRLMRLARLIAHHDKLYHDQDAPEISDADYDALVRENRELEERFPQLVR
PDSPSKRLGAAPTTALAKVAHARPMLSLENAFSEDEVNDFAARIRRFLNLPAEAFVAMTA
EPKIDGLSCSVRYERGDLVLAATRGDGAVGEDVTPNVRTIADIPQHIANAPDVLEVRGEV
YMSKADFEALNARQEASGGKIFANPRNAAAGSLRQKDASITAARPLRFLAHGWGEVSEPL
ADTQFEAMKRIESFGIPVSDLLVRCDDTAAMLAHYRAIEKARADLPFDIDGVVYKVDRLD
LQERLGFVARAPRWGLAHKFPAEKAETTLEAIDIQVGRTGKLTPVGRLTPVGVGGVIVAN
VTLHNRDEIQRLGLRIGDRVRIQRAGDVIPQVVENLTRDEVREPYVFPDHCPECQSEAVA
EEGEVDVRCTGGLICPAQRFERLRHFVSRGALDIEGLGEKSIAEFIELGWLHSPADIFRL
RNHRGALIGLEGWKEKSVDNLLGSIEAKREPDGPRFLFGLGIRQIGIVTARDLLKCFGTV
EELRRVAAHPDAQAEFAAVEGVGPVVAEALVDFFHEEHNREALDDLLSEVSPKPFVSDAR
QTEWTGKTIVFTGSLETMSRDEAKAQAERLGARAAGSVSAKTDLVVAGPGAGSKLKKAEE
LGIRVINEAEWAQIVADA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcgatcggcgaggcggaggccgccaatcggctgatgcggctggcgaggctc
atcgcgcatcatgacaagctttatcacgaccaggatgcgccggagatcagcgacgctgac
tatgatgcgctggttcgcgagaacagggaactcgaagagcgatttccgcagctggtgagg
ccggattcgccgtcgaagcggctcggtgctgctccgacgaccgcgctcgccaaggtcgct
catgcgcggccgatgctgagcctggagaacgcgttctcggaggacgaagtcaacgatttc
gccgcccggatccgacgcttcctgaaccttccggccgaggccttcgtggcgatgaccgcc
gagccgaagatcgatgggctgagctgctcggttcgctacgaaaggggcgatctggtcctc
gcggccacgcgcggcgacggagcggtcggcgaggacgtcacgccgaacgtccgaacgatc
gccgacattccgcagcacatcgcgaacgctccggacgtgctcgaagtccgtggcgaagtg
tacatgtcgaaggcggacttcgaggcgctgaacgcgcggcaggaagcttccggcggcaag
atcttcgcgaacccacgcaatgccgctgcaggctcgctccgccagaaggacgcgagcatc
acggcggcccgcccgttgcgcttcctcgcgcatggctggggcgaggtttcggaaccgctg
gcagacacgcagttcgaggcgatgaagcggatcgagagcttcggcattcccgtcagcgac
ctgctcgtccgctgtgacgatacggccgccatgctcgcgcactaccgcgcgatcgagaag
gcgcgcgccgaccttccgttcgacatcgatggtgtcgtctacaaggtcgaccgcctagac
ctgcaggagcggctcggcttcgtggccagggcgccgcgctgggggctggcgcacaagttt
ccggcggagaaggccgagaccacccttgaagcgatcgacatccaggtcgggcggactggc
aagctgacacccgttggccgcctgactccggttggcgtcggaggcgtgatcgtcgccaac
gtcaccctgcacaatcgcgacgaaatccagcggctcggcctccgcattggcgaccgcgtt
cgcatccagcgggccggcgacgtcatcccgcaggtcgtcgagaatcttacgcgcgatgag
gttcgcgaaccctacgtttttccggaccactgtcccgaatgccagagcgaggccgtcgcc
gaggaaggcgaagtcgacgtccgctgcaccggcggcctgatctgcccggcgcagcgtttc
gagcggctgcggcacttcgtttcgcgcggtgcgctcgatatcgaaggcctcggcgagaag
tcgatcgcggagttcatcgaactcggttggctacattcgcccgcagacatcttccgcctg
cgcaaccatcgcggcgccttgatcggccttgagggctggaaggagaagtcggtcgacaac
ctgctgggctctatcgaagccaagcgggaaccggacgggccgcgtttcctgttcgggctc
ggcatccgtcaaatcggcatcgtcacggccagggacctgctcaagtgcttcggcacggtc
gaggagcttcgcagggtggcagcgcacccggatgcgcaggccgagttcgcggctgtcgaa
ggcgtcggtccagtcgtggcggaggccctcgtcgatttctttcacgaagagcataatcgg
gaagcgctcgacgatttgctgtcggaggtctctccgaagcccttcgtgagcgatgccagg
cagactgagtggacgggcaagacgatcgttttcaccgggagcctggaaaccatgagccgc
gatgaagcgaaggcacaggcggaacgccttggtgcccgcgccgccggctccgtcagcgcg
aagaccgacctcgttgtcgcgggccccggtgcggggtcgaagctcaagaaggccgaagaa
ctcggcatccgcgtgatcaacgaagcggaatgggcgcagatcgtcgccgacgcctga
DBGET
integrated database retrieval system
