Sulfurimonas diazotrophicus: WCY31_04395
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Entry
WCY31_04395 CDS
T11008
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdiz Sulfurimonas diazotrophicus
Pathway
sdiz03030
DNA replication
sdiz03410
Base excision repair
sdiz03420
Nucleotide excision repair
sdiz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdiz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WCY31_04395 (ligA)
03410 Base excision repair
WCY31_04395 (ligA)
03420 Nucleotide excision repair
WCY31_04395 (ligA)
03430 Mismatch repair
WCY31_04395 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdiz03032
]
WCY31_04395 (ligA)
03400 DNA repair and recombination proteins [BR:
sdiz03400
]
WCY31_04395 (ligA)
Enzymes [BR:
sdiz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WCY31_04395 (ligA)
DNA replication proteins [BR:
sdiz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WCY31_04395 (ligA)
DNA repair and recombination proteins [BR:
sdiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WCY31_04395 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WCY31_04395 (ligA)
MMR (mismatch excision repair)
DNA ligase
WCY31_04395 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WCY31_04395 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
DUF7501
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
XAU15948
LinkDB
All DBs
Position
850537..852489
Genome browser
AA seq
650 aa
AA seq
DB search
MTAETYRESVALLNRYAYHYYVLDNPIASDEEYDRLYHDVLAYEEAHAEAVLPDSPTQRV
GGVPLEGFEKAAHRSRMWSLEDIFDAEGLQKWLERVAKLVDNVTFYCEPKFDGASLNLIY
EGGRLVQAITRGDGTIGEEVTQNVKTIRSVPLAIDYDGRIEIRGEVVIFKEEFDAINRER
EAQGEALFANPRNAAAGSLRQLDPKITAARNLVFLPYGIGENTLDIPLLSKRMEWIYALG
FRKPPLHRVCEGYDDIEAIYEEMKVTRDDFAMMLDGMVIKVDQVEAQEDMGYTVKNPRWS
VAYKFPAIEKMTRVRDVILQVGRTGVVTPVAIVEPVDIEGVVVERATLHNFDEIGRKDIH
IGDHVIILRSGDVIPKIIKVIPERRDGSERAVERPTRCPVCGSELLDEGALIKCQNLSCE
ARVVNAIIYFASKQCLNIDGLGDKIVEALYRAGLVKGVIDLYALSLEALLELEGFKEKKS
RNLLDAIEKSRGTACWRFVNGLGIEHIGEVASKQLCDTFGLDFPDATEEALLAIDGFGGE
MAASVLEFVRVNREQIEALRGVVQPAAPEQKAEAAENPFKGKTVVLTGTMSRPRPEIKTD
LEALGAKVAGSVSKKTDYVIYGEDAGSKYDKAVSLGVATLTEDAMKQMLQ
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgaaacctatcgcgaaagcgtggcgctgctgaaccgctacgcctaccactat
tatgtcctcgacaaccccattgccagcgacgaggagtacgacaggctctaccatgacgtc
ctggcgtacgaggaggctcatgcggaagcagtgcttcccgattcgccgacgcagcgggtc
ggcggggtgccgcttgaagggtttgaaaaggccgcgcatcgcagccgcatgtggagtctg
gaggatattttcgacgccgaggggctgcagaaatggctggagcgcgttgcaaagcttgtc
gacaacgtcaccttctactgcgagccgaagttcgacggggcgagcctcaacctgatctac
gaaggcggccgtctcgtgcaggcgatcacccgcggcgacggcacgatcggcgaagaggtg
acgcagaacgtcaaaacgatccgcagcgttcccctcgccatcgattacgacgggcgcatc
gagatccgcggggaggtcgtcatcttcaaagaggagttcgacgcgatcaaccgcgagcgc
gaagcgcagggcgaagcgctcttcgccaacccgcgcaacgccgccgcgggaagtctgcgc
cagctcgacccgaagatcacggcggcgcgcaacctcgtcttcctgccctacggcatcggt
gaaaatacgctcgacatccctctgctgagtaagcggatggagtggatctacgccctgggg
ttccgcaaaccgccgctgcaccgcgtctgcgagggctatgacgacatcgaggctatttac
gaggagatgaaagttacccgggacgatttcgcgatgatgcttgacggcatggtcatcaag
gtcgaccaggtcgaggcccaggaggatatgggctatacggtcaagaacccccgctggtcg
gtggcctacaagttcccggcgatcgagaagatgacccgggtccgtgacgtgatcttgcag
gtggggcgcaccggtgtcgtcacccccgtggcgatcgtcgagccggtcgacatcgagggg
gttgtcgtcgaacgcgcgaccctgcacaactttgacgagatcgggcgcaaggatatccac
atcggagaccacgtcatcatcctgcgcagcggcgacgtcatcccgaagatcatcaaggtc
attcccgaacggcgtgacggctcggaaagggcggttgaacgtccgacgcgctgcccggtc
tgcggtagcgaactcctcgacgagggggcgctgatcaagtgccagaacctctcctgcgaa
gcgcgggtcgtgaacgccatcatctatttcgcctccaagcagtgcctcaacatcgacggc
ctcggcgacaagatcgtcgaggccctctaccgggcggggctggtcaaaggggtcatcgat
ctctacgcgctttcgctcgaagcgctgctggagctcgaagggttcaaggagaagaagagc
aggaacctgctcgacgccattgaaaagagccggggcacggcgtgctggcgctttgtcaac
gggctggggatagagcacatcggcgaggtcgcttcgaaacagctctgcgacaccttcggc
ctggattttcccgacgcgacggaggaggcgctgctcgccatcgacggtttcggcggggag
atggcggcgtcggtgctcgaattcgtccgggtcaaccgggaacagatcgaagcgctgcgc
ggcgtcgtccagccggcggccccggaacagaaggctgaggcggcggagaaccctttcaag
gggaagacggtcgtgctcaccggcacgatgagccgaccccgtccggagatcaaaaccgat
ctggaggccctgggggccaaggtcgcggggagcgtgtcgaaaaagaccgattacgttatt
tacggcgaggacgccggcagcaagtacgataaggcggtgtcgctgggggtggcgaccctt
acggaagatgcgatgaaacagatgctacaatag
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integrated database retrieval system
