Sphingobacterium daejeonense: NCTC13534_02033
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Entry
NCTC13534_02033 CDS
T06632
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj03030
DNA replication
sdj03410
Base excision repair
sdj03420
Nucleotide excision repair
sdj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13534_02033 (ligA)
03410 Base excision repair
NCTC13534_02033 (ligA)
03420 Nucleotide excision repair
NCTC13534_02033 (ligA)
03430 Mismatch repair
NCTC13534_02033 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdj03032
]
NCTC13534_02033 (ligA)
03400 DNA repair and recombination proteins [BR:
sdj03400
]
NCTC13534_02033 (ligA)
Enzymes [BR:
sdj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC13534_02033 (ligA)
DNA replication proteins [BR:
sdj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC13534_02033 (ligA)
DNA repair and recombination proteins [BR:
sdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC13534_02033 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13534_02033 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC13534_02033 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC13534_02033 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
RNA_ligase
Auto_anti-p27
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
VTP95196
LinkDB
All DBs
Position
1:complement(1737835..1739853)
Genome browser
AA seq
672 aa
AA seq
DB search
MSVDIQAKIEELTRELNEYNYQYYVLAQPSISDYDFDHKLKELEALEIQYPEFRDPNSPT
LKVGGDITQRFNTVRHKWPMMSLGNTYNEQELKDFDGRVRKVVGDQVQYVAELKFDGLSI
SISYENGKLVQAVTRGDGTQGDEVTNNVKTIRSIPHQLRKGNYPPSFDIRGEIFMHKSAF
LRLNKEREDNGEQTYANPRNFASGTIKLQDSGEVAKRPLDCFLYFLYCDNRNKLFHDHRH
SIEEVKSWGFPVCEHSKLCNSIDEVLEFIHYWDDARHKLTYEIDGIVIKVNDFAQQEELG
FTAKSPRWAISYKFKAERVETILNSISYQVGRTGAVTPVANLKPVLLAGTTVKRASLHNA
NEIARLDLHEHDTVFVEKGGEIIPKIIGANVEKRPEGTKAFEYPSTCPECNTPLIREEGE
AVHYCPNEDGCKPQIVGKLQHFIGRKMMDIQGLGDETIETFYKLGLIRKIADIYTLIDRK
DELVGIERFGQKSIDNMLNGIEQSKNKPFEKVLFALGIRHIGETVAKKLAQHFKNIEAIK
NSTVDEILSVQDIGLRIADSIHAYLTNPEHWEEIEKLKSLGLQFEIEEKEIQLAGDSLSG
KTFLISGVFADYSREELTELIEAHGGKMLSSISSKLNYLVAGDKMGPSKLAKAEKLQIPM
ISEAQLLSMINE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtagatattcaagcgaaaatagaagaacttacccgtgagctaaacgaatataat
tatcaatattatgtgttagctcaaccctccatttcggattacgattttgaccataaattg
aaggaactggaggctttggaaattcaatatcctgaatttagagacccgaactcccctacc
ctaaaagttggtggtgatattacacaaaggtttaatactgtccgtcataaatggcctatg
atgtctttgggcaatacctataacgaacaggaattaaaagattttgatggaagggtaaga
aaagtagttggagatcaagttcagtatgtagctgagttgaagttcgacggtttatcgatc
tcaatatcttatgaaaacggcaaactcgtccaggcagtgacacgtggggatggtacacaa
ggtgatgaagttactaataatgtaaaaacaatccgcagtattccacatcaattgaggaaa
gggaattatccgccaagtttcgatatccgtggcgagattttcatgcataaatctgctttt
ctgaggttgaacaaagagcgtgaagacaatggggaacaaacctatgccaacccaaggaat
tttgcatccggcacaatcaagcttcaggattctggagaggtggccaaaagacctttagat
tgcttcctgtactttctgtactgtgacaatagaaataaattgttccatgatcataggcat
agcatcgaagaagtcaaatcttggggcttcccagtctgtgaacattcaaaactttgtaat
tctattgacgaggttttggaattcatccattattgggatgatgcccgccacaaactgact
tatgaaatcgatggcattgtaatcaaagtcaatgatttcgcacaacaagaggaattaggc
tttaccgctaaatcaccacgttgggctatatcttataaattcaaagctgagcgtgtcgaa
acgatcttgaacagcattagttatcaggttggaagaaccggagctgttactcctgttgcc
aatttaaaaccagttttgttagctggcacaacggtaaaaagagcttctttacataatgca
aatgaaattgctcgtctggatctacatgaacacgatactgtatttgtcgaaaaaggaggt
gaaataatccctaaaatcattggtgcaaatgttgaaaaaagaccagaaggaacaaaagca
tttgaatatccaagtacatgtcctgaatgtaatactccattaattcgagaagagggtgaa
gctgtacattattgcccaaatgaagatggctgcaaacctcaaatagtaggaaagctgcag
cactttataggcagaaaaatgatggatattcaaggtttgggagatgaaacaatagaaaca
ttctacaagcttggattgattcgcaaaatagcagatatctatactttgattgatagaaag
gatgagttggtcggtattgaacgttttggtcagaagtctattgacaatatgctaaatggt
attgaacaatctaaaaataaacctttcgagaaggtgctatttgctttgggaattcgccat
attggagagacggtagcaaaaaaacttgcgcaacactttaaaaatatcgaggcaatcaag
aattccactgtagacgaaatattgtcagtacaggatataggactccggatagcagacagt
atacatgcgtatctgacaaatcctgaacattgggaagagattgaaaaactcaaatcctta
ggccttcagttcgaaatagaagaaaaagaaatacaactcgccggagatagtttatcgggc
aaaacgtttttgatttccggtgtatttgcagattattcccgggaagaattgacggaattg
atcgaggcgcacggtggcaagatgctgagcagtatttcttcaaagctgaattatttagtt
gctggtgataaaatgggtccatcaaaactggcaaaggcagaaaaacttcagattccgatg
atttctgaagctcaactgctatcaatgattaatgaataa
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