Shewanella dokdonensis: KHX94_17645
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Entry
KHX94_17645 CDS
T07469
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KHX94_17645 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_17645 (nth)
Enzymes [BR:
sdk01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
KHX94_17645 (nth)
DNA repair and recombination proteins [BR:
sdk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KHX94_17645 (nth)
Prokaryotic type
KHX94_17645 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QVK22957
LinkDB
All DBs
Position
complement(3678138..3678779)
Genome browser
AA seq
213 aa
AA seq
DB search
MNNAKRTEILKRLRAQNPHPKTELHYSSPFELLVAVALSAQATDVSVNKATAKLFPVANT
PQAIVNLGVEGLKHFIKTIGLYNNKAVNVVALSQKLLDDYQGQVPEDRAALESLPGVGRK
TANVVLNTAFGWPTIAVDTHIFRVSNRTNFAPGKNVQQVEDKLLKVVPDEFKVDVHHWLI
LHGRYTCIARKPRCGSCIIEDLCEFKEKIYPES
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
gtgaataacgctaaaagaactgaaattcttaaacgcctaagagcgcagaatcctcaccct
aaaaccgaattacattacagtagtccatttgagctgctggtagctgtcgcattgtcagca
caagccacagacgtgagtgtcaataaggccacggccaaactgttcccggtagctaacaca
ccgcaagccatcgtaaatctaggtgttgaaggactcaaacacttcatcaaaaccatcggg
ctgtacaacaacaaagctgtcaatgtcgttgcgctatcgcagaaattattggatgactat
cagggtcaagtgcccgaggacagagccgcattagaatccttgcctggtgtgggccgaaaa
acggcaaatgtggtgcttaacactgcctttggctggccaaccatagccgtcgatactcac
attttccgggtcagcaatcgtaccaattttgcccctggaaaaaacgtacagcaggtagag
gataaactgctaaaagttgtcccagatgaatttaaggttgatgttcaccactggctaatt
ctgcacggtcgatatacttgcattgcacgtaagcctagatgcggcagttgcattatcgaa
gatctctgtgaatttaaagagaaaatttatccagagtcataa
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