Stegodyphus dumicola: 118197279
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Entry
118197279 CDS
T07385
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
118197279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdm03400
]
118197279
Enzymes [BR:
sdm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118197279
DNA repair and recombination proteins [BR:
sdm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
118197279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
DNA_ligase_IV
RNA_ligase
RTT107_BRCT_5
LIG3_BRCT
mRNA_cap_enzyme
XendoU
SepF
Motif
Other DBs
NCBI-GeneID:
118197279
NCBI-ProteinID:
XP_035224665
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MSTVAEHVPFLHLCKLCQKISEKKGRDKKKTLRDFIENWRNFHNQLHKNDTNTTDSFYPA
LRLLLPQSERQRAAYGIKEFTLAKLLIEIFCLDKNGVDAKKLINYRSPKSAHAEAGDFAS
VAYFVLKNRSPEKGTLTIHDINYYLDSIASNSAAKMKDEMKGDLLHLLRNTSAIEQKWLI
RIILKDMKLGISENSVLNAFHPDAKDLYNVTNSLEKVCTSLRDPSVRLHEIEISLFSPFR
PMLAEIALPNQVEELMQNKSFIVETKYDGERLQLHKDGDTYMYFSRGGHDCTDTYGNSPS
VGTLTPYISKCFKPHITSCILDGEIVIYSSKLNCIVSKGENAEIQAMQPDGDYGPCFCVF
DILMVNGKVLSNLPLTDRVIYIKDTFTPIENKIRYTEQKIFSKNAEVVDELNSAIDNRLE
GIVIKNPESIYKPNMRKGGGWLKVKPDYIDNLMDELDLLIIGGYFGEGRRSSYISHFLLG
VAVPDSNGDEPKCFHSFCKVGSGYSLKELYELSGKLGQHWEAYNPKKSPSCLVIGGGRKE
QPDVWIEPSKSQIVQVKAAEIVRSSCFTTNYTLRFPRVEKIRYDKPWYQCMTTTELENLR
NLAEGRLATRNIVEEEEEPSPKKKKLQKEKMITIAPHFRPTDISDVQQISELLKDKEICV
MSASLENKQQLERKIAEYGGKFVQNPGSRTFCVVSDKVTAKVRNIISTNAYDVVTSDWLN
RCFEEKTLLPWVPDDLLHSTEQTREKLSEFFDAYGDSYTQDATVASLSKVFNNISKKQCL
AESITTQEIAEIEESYFPESSPFGLFRKCRIYVSGEGNDTTSVEHKESKLKLVYFQLKLY
GADMCSDIDSSTSHVVIHSSEANTVKELNSISAQRRNGRFHIVTEKWVSDCIKEKKLLQE
RGYMPLATDD
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagttgcagaacatgtgccttttctgcatttatgcaaattgtgccagaagata
tctgaaaagaaagggagggataaaaagaaaaccttaagagatttcattgagaactggcga
aattttcataaccagcttcataaaaatgatactaacacaactgattcattttatcctgca
cttcgtctcctcttaccccagagtgaaaggcaaagagcagcatatggcataaaagaattt
actctagccaaattgttgattgaaatattttgcctagacaaaaatggtgttgacgctaaa
aaacttatcaattatcgatcacctaaatcggcacatgctgaagctggtgattttgcaagt
gttgcttattttgttcttaaaaacagaagtccagagaaaggaactttgacaatccatgac
atcaattattatcttgatagtatagcatcaaatagtgctgccaagatgaaagatgaaatg
aaaggcgatcttctgcatcttttgagaaacacatctgctattgaacagaagtggctaata
agaataatactaaaagatatgaaattaggaataagtgaaaatagtgttttgaatgcattt
catcctgatgccaaagatttgtacaatgttactaacagtttagaaaaggtatgtactagt
ctaagagatccttctgtacgacttcatgaaatagaaattagcctcttctctccattccga
ccaatgttagctgaaatagcactgccaaatcaagtagaggaactgatgcagaataaatca
tttattgttgaaacaaaatatgatggggagcgattacaacttcacaaagatggtgataca
tacatgtatttctccagaggaggccatgactgtacagacacatatggaaattcaccttca
gttgggactttaactccttacattagtaaatgcttcaaacctcatatcactagttgtata
ttagatggggaaattgtaatttacagtagcaaactgaattgcattgtttctaaaggagaa
aatgcagaaattcaagctatgcagccagatggagattatggtccttgcttttgtgtcttt
gatattttaatggtcaatgggaaagtgctcagcaatcttcctttgactgatagagtaatc
tatataaaagatacatttactcctattgaaaataagatacgttacacagagcagaaaatt
ttctcaaaaaatgctgaagttgttgatgaactaaacagtgcaatagataatagattagaa
ggtattgttattaagaatccagaatctatctacaaaccaaacatgcgtaaaggaggtggt
tggctgaaagtaaaacctgattatattgataatttaatggatgaacttgatcttcttata
attggtggatattttggagaaggtcgtagatcaagttacatatctcactttttattgggt
gttgcagttcctgacagtaatggagatgaaccaaaatgcttccattctttttgtaaagtt
ggatctggatattctttaaaagaactgtatgaactatctggtaaacttggtcaacactgg
gaagcatataatccaaagaaatcgccctcctgtcttgtgattggaggaggcagaaaagag
caaccagacgtttggattgaaccttcaaaatctcagatagttcaagtaaaagctgctgag
atagtccgaagcagttgttttacaacaaattatacattacgttttccaagggttgagaaa
attcgctatgataaaccatggtaccaatgcatgacaacaacagaattagagaatctgaga
aatcttgctgaaggaaggcttgctacccgaaatattgttgaagaagaggaggaaccatct
ccaaagaagaaaaaattgcaaaaagaaaaaatgatcaccattgctcctcatttccgccct
accgacataagtgatgttcagcagatttcagaattattgaaagacaaggagatatgtgtt
atgtctgcatctctggaaaataaacagcagctggaaagaaaaattgctgagtatggagga
aaatttgttcaaaatcctggaagcaggacattttgtgttgtctctgataaagttacagct
aaagttagaaatattatcagtactaatgcatatgatgttgtgacatctgattggctcaac
cgatgctttgaagagaaaacattgttaccttgggttcctgatgaccttcttcattctact
gagcaaacacgtgaaaaactaagtgaattctttgatgcatatggtgacagttacacacaa
gatgccactgtagcttcactaagcaaagtttttaataatatatcaaagaagcaatgtctg
gctgaaagtattacaacacaagaaattgctgaaatagaagaaagttattttcctgaatca
tcaccctttggcttgtttcgaaagtgtcgaatttatgtaagtggagaaggtaatgatacc
acttctgtagaacataaagaaagcaaattgaaacttgtgtattttcaactaaagctttat
ggtgcagatatgtgctcagatattgattcatctacttcacatgttgttattcattccagt
gaagcaaatactgtgaaagaattgaattccatatctgcacaacgaaggaatggaaggttt
cacattgttacagaaaagtgggtgtctgattgtataaaagaaaagaagctcttgcaagaa
cgaggatatatgccacttgcaactgatgattaa
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