Sphingomonas donggukensis: M9980_11555
Help
Entry
M9980_11555 CDS
T08944
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdon
Sphingomonas donggukensis
Pathway
sdon03030
DNA replication
sdon03410
Base excision repair
sdon03420
Nucleotide excision repair
sdon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9980_11555 (ligA)
03410 Base excision repair
M9980_11555 (ligA)
03420 Nucleotide excision repair
M9980_11555 (ligA)
03430 Mismatch repair
M9980_11555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdon03032
]
M9980_11555 (ligA)
03400 DNA repair and recombination proteins [BR:
sdon03400
]
M9980_11555 (ligA)
Enzymes [BR:
sdon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M9980_11555 (ligA)
DNA replication proteins [BR:
sdon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M9980_11555 (ligA)
DNA repair and recombination proteins [BR:
sdon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M9980_11555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M9980_11555 (ligA)
MMR (mismatch excision repair)
DNA ligase
M9980_11555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M9980_11555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
DNA_ligase_ZBD
BRCT
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
URW75176
UniProt:
A0ABY4TS10
LinkDB
All DBs
Position
complement(2355645..2357726)
Genome browser
AA seq
693 aa
AA seq
DB search
MTAPSPATPEDAAAELERLAHDIARHNRLYHTDDAPEISDADYDALMRRNAAIEAAFPEL
VRADSPARLVGAAPSGHLAKVAHARPMMSLDNAFSAEDVADFVARVRRFLKLAENTPVAL
TAEPKIDGLSCSLRYEGRRLVRALTRGDGTTGEDVTANVRTIEDVPQSLPADAPDLVEIR
GEIYMAKADFLALNARLLAEAEAAGKDARQFANPRNAAAGSLRQKDAAVTASRPLRFLVH
GWGEASAVPGDTQYDVIRAVAGWGFPVADTFERCADTAAALAVYDRIEAQRADLPFDIDG
VVYKVDRLDWQARLGSVGRAPRWALAHKFPAERAQTTLERISIQVGRTGKLTPVARLEPV
TVGGVVVSNATLHNAHEIARLGVREGDRVVIQRAGDVIPQIVENLTRDTERPAYVFPDHC
PDCGSEAVAEEGEVDIRCTGGLICPAQRLERLKHFVSRGALDIEGLGEKTLVEFIDLGWI
AEPADIFRLAAHRDALVGREGWQAKSVDALLAAIAAKRAPDAARLLFGLGIRHVGQVTAR
DLMRMFVALPALRAAAEAAREGDADAAHRFALIDGVGPAVVTALGDFFHEPHNVRAWDDL
LAEIAPPPFVVETRASPVSGKTVVFTGTLETMSRDEAKAQAESLGARVAGSVSAKTDLVV
AGPGAGSKLKKAAELGIEVIDEAAWGRIVADAN
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgccgtcgcccgccacgcccgaagatgccgccgccgagctggagcggctggcg
cacgacatcgcgcggcacaaccgcctctatcacaccgacgacgcgcccgagatcagcgac
gccgactatgacgcgctgatgcgccgcaatgccgcgatcgaggcggcgtttcccgaactg
gtgcgcgccgattcgcccgcgcggctggtcggcgctgcaccgtcggggcatcttgccaag
gtcgcgcacgcgcgcccgatgatgagcctcgacaatgcgttctcggccgaggacgtcgcc
gatttcgtcgcccgcgtccgccgcttcctgaagctcgccgagaacacgccggtcgcgctg
accgcagagcccaagatcgacgggctgtcctgttcgctgcgctacgaggggcgccggctg
gtccgcgcgctgacccgcggcgacgggacgaccggcgaggacgtgaccgccaacgtccgc
acgatcgaagacgtgccgcagagcctgcccgcggacgcgcccgatctggtcgagatccgc
ggcgagatttacatggcgaaggccgatttcctggcgctcaacgctcgcctgctcgccgag
gccgaggcggcgggcaaggacgcgcgccagttcgcgaatccgcgcaacgccgccgccgga
tcgctgcgtcagaaggatgccgccgtcaccgccagccgacccttgcgcttcctggtgcat
ggttggggcgaggcgagcgcggtgccgggcgacacccaatatgacgtgatccgcgcggtt
gccggctggggcttcccggtcgccgacaccttcgaacgctgcgccgataccgccgcggcg
ctggcggtgtacgaccggatcgaggcgcagcgcgccgacctgccgttcgacatcgacggg
gtggtgtacaaggtcgaccgcctcgactggcaggcgcggctgggcagcgtcgggcgggcg
ccgcgctgggcgctggcgcacaagtttcccgccgagcgcgcgcagacgacgctggagcgg
atatcgattcaggtcgggcgcaccggcaagctgaccccggtcgcgcggctggagccggtg
acggtcggcggcgtggtcgtcagcaacgcgacgctgcacaatgcgcacgagatcgcgcgg
ttgggcgtgcgcgagggcgaccgcgtagtcatccagcgcgccggtgacgtcatcccgcag
atcgtcgagaatctgacccgcgacaccgagcgccccgcctatgtcttccccgatcactgc
cccgactgcggcagcgaggcggtggccgaggaaggcgaggtcgacattcgctgcaccggc
ggcctgatctgtccggcgcagcggctcgaacggctgaagcacttcgtcagccgcggcgcg
ctggatatcgaggggctgggggagaagacgctggtcgagttcatcgacctcggctggatc
gccgagcccgccgacatcttccgcctggccgcgcaccgcgacgcgctggtcgggcgcgag
gggtggcaggcgaaatcggtcgatgcgctgctcgccgcgatcgcggcgaagcgcgcgccc
gatgccgcgcggctgctgttcgggctgggcatccgccacgtcgggcaagtgaccgcgcgc
gacctgatgcggatgttcgtcgcgctgcccgcattgcgtgcggcagcggaagcggcacgg
gagggtgacgccgacgccgcgcaccgtttcgcgctgatcgacggcgtcggccccgccgtc
gtcaccgcgctcggcgacttcttccatgagccgcacaatgtgcgcgcgtgggacgacctg
ctcgccgaaatcgcgccgccgccgttcgtggtcgagacgcgcgcctcaccggtcagcggc
aagacggtggtgttcaccggcactcttgagacgatgagccgcgacgaggccaaggcgcag
gccgaatccctcggcgcgcgcgtggccgggtcggtgtcggcgaagaccgacctggtcgtc
gcgggcccgggcgccggatcgaagttgaagaaggccgccgagctcggcatcgaggtgatc
gacgaggcggcgtggggtcggattgtcgcggacgcgaattag
DBGET
integrated database retrieval system
