Sulfuricella denitrificans: SCD_n01666
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Entry
SCD_n01666 CDS
T02857
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdr
Sulfuricella denitrificans
Pathway
sdr03030
DNA replication
sdr03410
Base excision repair
sdr03420
Nucleotide excision repair
sdr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCD_n01666 (ligA)
03410 Base excision repair
SCD_n01666 (ligA)
03420 Nucleotide excision repair
SCD_n01666 (ligA)
03430 Mismatch repair
SCD_n01666 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdr03032
]
SCD_n01666 (ligA)
03400 DNA repair and recombination proteins [BR:
sdr03400
]
SCD_n01666 (ligA)
Enzymes [BR:
sdr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCD_n01666 (ligA)
DNA replication proteins [BR:
sdr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCD_n01666 (ligA)
DNA repair and recombination proteins [BR:
sdr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCD_n01666 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCD_n01666 (ligA)
MMR (mismatch excision repair)
DNA ligase
SCD_n01666 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCD_n01666 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Motif
Other DBs
NCBI-ProteinID:
BAN35487
UniProt:
S6B4E4
LinkDB
All DBs
Position
complement(1680907..1682931)
Genome browser
AA seq
674 aa
AA seq
DB search
MVLPADIVARARFLREELERHNYLYYVLDEPEIPDAEYDKLFRELEWLEAENPLLATPDS
PTRRIGATPLAEFSQLTHRVPMLSLNNAFEDEEVAAFDRRVREGLGVERVEYAVDTKFDG
LAISLIYENGILLQGATRGDGYTGEDVTTNLRTIKAIPLRLHTTNPSQLLEVRGEVLILK
ADFEKLNRQQRDKGEKEFANPRNAAAGSLRQLDPRITATRPLTFFAYGLGSVEGVNLPRK
LSAVMDYLESLRVPVCRERKVVQGVDGLLEYYRMIGARRDSLPYDIDGVVYKVNDLDSQE
RLGFVARAPRFAVAHKFPAQEAMTELLGITVQVGRTGALTPVARLRPVFVGGAMVSNATL
HNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGVVPGNRHAGAQEFSLLELYPVCPVCGSHV
IRLPDEAAARCSGGLFCPAQRKQAILHFASRRAMDIEGMGDKLVDQLVDKELIHTPADLY
KLSMNTLANLDRMAEKSASNTLAAIEASKKTTLARFIFALGIRNVGEATAKDLARHFGGL
DALMAADDGALQQVPDVGPVVAQSIVQFFVEPHNCEVIAQLVAAGVHWEEGAGSPVSTSP
ISGKTFVLTGTLPNLTRDEAKERIEALGGKVTGSVSKKTDFVVAGAEAGSKLIKAQELGV
LVLDEIQLKEMLGE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggttttacccgccgacatcgttgcccgcgcccgtttcttgcgcgaggaactcgagcgg
cacaactacctatactacgttcttgatgagccggaaattccggatgccgagtacgataaa
ctgttccgcgaactggagtggctggaagcggaaaatccgctgctcgctactcccgattca
cccactcggcgcattggcgctacccccctagccgaattttcccaactgactcaccgcgtg
cccatgctttccctcaacaatgcgttcgaggatgaggaagtggcggcattcgaccggcgc
gtgcgggagggcctcggtgttgagagggtggaatatgcggtagacaccaaattcgacggt
ctggcgatcagtctgatctatgaaaacggcatcctgcttcaaggcgcgacgcggggcgac
ggctacactggtgaggatgtgaccaccaatttgcggacgatcaaggccattccgctgcgg
ctgcatacgacaaatccgtcgcaactgctggaagtgcgaggtgaagtgctgatactcaag
gcagacttcgaaaagcttaaccgccagcagcgggataagggcgaaaaggaattcgccaac
ccgcgcaacgccgccgccggttcgctacgccagctcgatccacgcattacggccacgcgt
ccgttgaccttctttgcttacggtctgggtagtgtcgaaggggtgaatttgccacgtaaa
ctaagtgctgtcatggattacctggaaagcctgagagtgccggtttgccgtgagcgcaag
gtggtgcagggggttgatggcctgctggagtactatcgcatgatcggcgccaggcgcgat
agtttgccttacgatatcgacggcgtggtgtacaaggtcaacgacctggatagccaggag
cggttggggttcgtcgcgcgtgcgccgcgcttcgccgttgctcacaaattcccggcacag
gaagcgatgaccgaactgctggggataaccgtgcaggtagggcggactggcgcattgacc
ccggtggcgcggttgaggccggtttttgttggcggggcgatggtgtccaacgccacgctg
cacaatgaggacgaaattcgccgcaaggatgtgcgcattggcgacactgtgatcgtgcgt
cgcgccggcgacgtcattccggaggtagtgggcgtggtgccggggaaccgtcatgccggc
gcgcaggaattcagtttgctggaactatatccggtgtgcccggtatgcggctcccatgtc
atccgcctgccggatgaggcggcggcgcgttgcagcggcgggctgttctgcccggcgcaa
cgcaagcaggctatccttcacttcgccagtcgccgtgccatggatatcgagggcatgggc
gacaagctggtggatcaactggtggacaaggaactgatccacaccccggccgacctgtat
aaactgagcatgaacaccctggccaatcttgaccgtatggcggaaaaatccgcgagcaat
acactggcggcgatcgaggccagcaagaaaaccaccctggcgaggttcattttcgccctc
ggtatccgcaacgtgggcgaggcgactgccaaggatctggcgcgccattttggcggcctc
gacgccctgatggctgcagatgatggggcgctgcaacaggtgccggatgtggggccggtg
gtggcacagagtatcgtccagttttttgttgagccacacaattgcgaggtgatcgcccaa
cttgtcgccgccggtgtgcactgggaggagggtgcagggtcgcctgtcagcaccagcccg
atcagcggaaaaacctttgtgctgaccggaaccttgccgaacttgacacgggatgaagcc
aaggaaagaatcgaggctttgggtggcaaagtaacgggtagcgtgtcgaagaagacggat
tttgtggttgccggcgcagaggcgggcagcaaactcatcaaagcgcaggagttgggcgtg
cttgtgctggatgaaattcaattaaaagaaatgttgggggagtaa
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