Sulfuricella denitrificans: SCD_n01986
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Entry
SCD_n01986 CDS
T02857
Symbol
nth
Name
(GenBank) HhH-GPD:Iron-sulfur cluster loop (FCL)
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
sdr
Sulfuricella denitrificans
Pathway
sdr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sdr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SCD_n01986 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdr03400
]
SCD_n01986 (nth)
Enzymes [BR:
sdr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SCD_n01986 (nth)
DNA repair and recombination proteins [BR:
sdr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SCD_n01986 (nth)
Prokaryotic type
SCD_n01986 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Ogg-HhH
HHH_8
HHH_5
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
BAN35797
UniProt:
S6B5I3
LinkDB
All DBs
Position
2025394..2026032
Genome browser
AA seq
212 aa
AA seq
DB search
MNTAKRREIFTRFRAANPKPTTELVYRTPFELLVAVVLSAQATDKSVNLATAKLFPVANT
PQKMLTLGQEGLESYIKSIGLYKSKARHLIATCRLLLEQHDSEVPQNREQLEKLPGVGRK
TANVILNTAFGQPTIAVDTHIFRVANRIGIAPGTTVLEVEKKLLKFIAPEFRHDAHHWLI
LHGRYICKARKPDCPHCLINDLCEYKEKILPL
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgaataccgctaaacgtcgcgaaatcttcacccgctttcgcgccgccaaccccaaaccc
accactgaactggtctaccgcaccccattcgaactgctagtggcggtggtgctatcggcc
caagccacggacaagagtgtcaacctcgccaccgccaagctgtttccggtggccaatacg
ccgcaaaagatgctcaccctcggccaggaagggctggagtcctacatcaagtccatcggc
ctgtacaagagcaaggccaggcacctgatcgcaacctgccgcctgctgctggaacagcac
gacagcgaagtaccgcaaaaccgggagcaactggaaaaactgcccggcgtcggacgcaaa
actgcgaatgtaattttgaacaccgccttcggccagcctaccatcgcagtagacacccac
atcttccgtgtcgccaaccgtatcggtatcgcgccgggcacgaccgtactggaagtggaa
aagaagctgctcaagttcatcgcgccggagttccgtcacgatgcacaccactggctgatc
ctgcacggacgctacatctgcaaggcgcgcaagccggactgcccgcactgcttaatcaac
gacctgtgcgaatacaaagagaaaatcttacccttatga
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