Streptomyces drozdowiczii: NEH16_04060
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Entry
NEH16_04060 CDS
T09042
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdrz
Streptomyces drozdowiczii
Pathway
sdrz03030
DNA replication
sdrz03410
Base excision repair
sdrz03420
Nucleotide excision repair
sdrz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NEH16_04060 (ligA)
03410 Base excision repair
NEH16_04060 (ligA)
03420 Nucleotide excision repair
NEH16_04060 (ligA)
03430 Mismatch repair
NEH16_04060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdrz03032
]
NEH16_04060 (ligA)
03400 DNA repair and recombination proteins [BR:
sdrz03400
]
NEH16_04060 (ligA)
Enzymes [BR:
sdrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NEH16_04060 (ligA)
DNA replication proteins [BR:
sdrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NEH16_04060 (ligA)
DNA repair and recombination proteins [BR:
sdrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NEH16_04060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NEH16_04060 (ligA)
MMR (mismatch excision repair)
DNA ligase
NEH16_04060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NEH16_04060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
DNA_ligase_ZBD
DUF7575
Motif
Other DBs
NCBI-ProteinID:
UZK53414
LinkDB
All DBs
Position
complement(902903..905002)
Genome browser
AA seq
699 aa
AA seq
DB search
MEGMTNSAVVLADHASYAAAVEEAAQAAAAYYATGESTLDDDSYDRLARGIAAYEREHPQ
EVLPASPTGKVAGGAAVGDVPHTVPMLSLDNVFSAEQFATWTASLERRIGRPVTAWSVEP
KLDGLAVAARYHEGRLERLITRGDGTAGEDVSHASGTVVGLPARLAEPVTIEIRGEILMT
TEQFEQANTVRTEHGGAPFANARNGAAGTLRAKDRAYTVEMTFFAYGALPLPESGALAAE
LTELPHSQVLARVAKLGVHTAADTEVAPRTAATVEEVQARIEEVAALRAALPFGIDGIVI
KADLAADQRDAGSGSRAPRWAIAYKLPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEID
GSTVSYATLHNPADITRRDLRVGDHVMVYKAGDIIPRIEAPVAHLRTGDEQPIAFPEACP
QCGSEIDSSEQRWRCVRGRDCRIVASVSYAAGRDQLDIEGLGTTRVVQLVDAGLVTDFAD
LFMLEREQLLTLDRMGETSTDNLLAAIDTARSQPLSRVFCALGVRGTGRSMSRRIARYFA
EMDRIRAAGEEELQRVDGIGKEKAAGVVAELAELAPLIDKLVAAGVNMTEPGATPPPPPG
EEAEGETAAGTEGAPLAGMTVVVTGAMTGALEKLSRNQMNELVERAGGKSSSSVSKRTTL
LVAGEKAGSKRTKAEELGVRIATPEEFAEMVGDFLPVDA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggagggcatgacgaactcagctgtcgtgctcgccgaccatgcctcctacgccgccgcc
gtcgaggaggccgcgcaggccgccgccgcgtactacgccacgggcgagagcacgctcgac
gacgactcctacgaccgcctggcgcgcggcatcgccgcgtacgagcgggagcacccgcag
gaggtgctgcccgcctcgccgaccggcaaggtggcgggcggcgcggccgtcggggacgta
ccgcacacggtgccgatgctctccctcgacaacgtcttctcggccgagcagttcgccacc
tggaccgcgtcgctggagcgccggatcggacggcccgtcaccgcgtggagcgtcgagccg
aagctcgacgggctcgcggtcgccgcgcggtatcacgagggccggctcgaacggctgatc
acccggggcgacgggaccgcaggtgaggacgtctcccacgcgagcgggaccgtcgtcggc
cttccggcgcggctcgcggagccggtcacgatcgagatacgcggcgagatcctgatgacc
accgagcagttcgagcaggccaacaccgtccgcaccgagcacggcggcgcccccttcgcc
aacgcgcgcaacggcgccgccggcaccctgcgcgccaaggaccgcgcgtacacggtggag
atgacgttcttcgcttacggcgctctgccgctgcccgaatccggtgcactggccgccgag
ctgaccgagctgccgcacagccaggtgctcgcccgggtcgcgaagctcggcgtgcacacc
gccgccgacacggaggtcgcgccgcgcaccgccgccaccgtcgaggaggtccaggcccgg
atcgaggaagtcgccgcgctgcgggccgcgttgccgttcgggatcgacggcatcgtcatc
aaggcggacctggcggccgaccagcgtgacgcgggctccggctcccgggccccgcgctgg
gccatcgcctacaagctgcccgccgtcgagaaggtcacccgcctcctcggcgtcgagtgg
aacgtgggccgcaccggcatcatcgcgccgcgcgccgtgctggagcccgtcgagatcgac
ggctcgaccgtcagctacgcgaccttgcacaacccggccgacatcacccgccgggacctg
cgcgtcggcgaccatgtgatggtctacaaggcgggcgacatcatcccccgcatcgaggcg
cccgtcgcccatctgcgcaccggcgacgaacagcccatcgccttccccgaggcatgcccc
cagtgcggttcggagatcgacagcagcgagcagcgctggcgctgtgtgcggggccgcgac
tgccgcatcgtcgcctccgtctcgtacgccgccgggcgcgaccagctcgacatcgagggg
ctcggcaccacccgggtcgtccagctggtcgacgccggtctcgtcaccgacttcgccgac
ctgttcatgctggaacgcgaacagctgctgacgctcgaccggatgggggagaccagcacc
gacaatctgctggccgcgatcgacacggcccgctcgcagccgctctcccgggtcttctgc
gccctcggcgtgcgcggcaccgggcgctccatgtcccgccggatcgcccgctacttcgcg
gagatggaccgcatccgggccgccggtgaggaggagttgcagcgggtcgacggcatcggc
aaggagaaggcggccggcgtggtcgcggagctggccgagctggccccgctcatcgacaag
ctcgtcgccgccggggtgaacatgaccgaaccgggcgcgaccccgccgcccccgccgggc
gaggaggccgagggggagacggcggccggcaccgaaggcgctccgctggcggggatgacc
gtggtggtcaccggggccatgacgggcgccttggagaagctgtcccgcaaccagatgaac
gagctggtcgaacgggccggcggcaagtcctcctccagcgtctccaagcgcacgacgctg
ctcgtggccggtgagaaggcgggctccaagcggaccaaggcggaggagctgggggtgcgg
atcgcgacgccggaggagttcgcggagatggtgggggacttcctgcccgtcgacgcgtag
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