Streptomyces drozdowiczii: NEH16_09110
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Entry
NEH16_09110 CDS
T09042
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdrz
Streptomyces drozdowiczii
Pathway
sdrz03030
DNA replication
sdrz03410
Base excision repair
sdrz03420
Nucleotide excision repair
sdrz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NEH16_09110 (ligA)
03410 Base excision repair
NEH16_09110 (ligA)
03420 Nucleotide excision repair
NEH16_09110 (ligA)
03430 Mismatch repair
NEH16_09110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdrz03032
]
NEH16_09110 (ligA)
03400 DNA repair and recombination proteins [BR:
sdrz03400
]
NEH16_09110 (ligA)
Enzymes [BR:
sdrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NEH16_09110 (ligA)
DNA replication proteins [BR:
sdrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NEH16_09110 (ligA)
DNA repair and recombination proteins [BR:
sdrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NEH16_09110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NEH16_09110 (ligA)
MMR (mismatch excision repair)
DNA ligase
NEH16_09110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NEH16_09110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
UZK54274
UniProt:
A0ABY6PR80
LinkDB
All DBs
Position
complement(2070771..2072987)
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEEQTAVPVEAQERHKLLAEQIEEHRFRYYVNDQPVVSDAEFDRLLRELEALEESHPP
LRTPDSPTQKVAGPYRTEFTSVEHREPMLSLDNAFDDEELAAWGERIARDVGSPGYHFLC
ELKIDGLAVNLTYEHGVLTRAATRGDGRTGEDITPNVRTISDIPHRLKGDRIPALVEVRG
EVFFPMEGFEELNARLVEADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREG
FDIDCLSHAYELLREWGLPTAKYNKVVDSLEGVREFIAYFGEHRHSVEHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYAPEEVNSKLVNIRVGVGRTGRVTPYAQVEPVVVAGSEV
EFATLHNQNVVEAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTERAFVMPTHCPECGT
ELKPTKEADVDVRCPNARSCPAQLRERISYLAGRKCLDIDHFGYVVAAALTAPLEPAEPP
LRDEGDLFGLTMEELLPIRAYVLDPDSGLPKRDPKTGEEKKALVFANQKGEPKKNAVAML
DAIEAAKQAPLARILTGLSIRHVGPVAARELARQFRSIDRIEEATEQELADADGVGPIIA
ASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGPRPLEGLTVVVTGTLTGHTRDGAK
EALQSRGAKVTGSVSKKTAFVVVGDNPGSKYDKAVQLKVPVLDEAGFAVLLTEGPDAARE
AAVPAGEPAPEEGAAPGE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgaagagcagacggcggtgccagtcgaggcgcaggagaggcacaagctcctc
gcggagcagatcgaggagcaccgcttccggtattacgtgaacgaccagccggtcgtcagc
gacgccgagttcgaccggctgctgcgcgagctggaggccctggaggagtcccaccccccg
ctgcgcaccccggactcgccgacccagaaggtcgccgggccctaccgcacggagttcacg
tcggtcgagcaccgcgagccgatgctgtccctggacaacgccttcgacgacgaggagctg
gccgcctggggcgagcgcatcgcccgggacgtcggctcgcccggctaccacttcctgtgc
gagctgaagatcgacggcctcgccgtcaacctcacgtacgagcacggcgtgctgacccgg
gccgcgacccggggcgacggccgcaccggcgaggacatcacgcccaacgtccgcaccatc
tccgacatcccgcaccggctgaagggcgaccgcatcccggcgctggtcgaggtccgcggc
gaggtcttcttcccgatggaggggttcgaggagctgaacgcccggctggtcgaggccgac
gacaagcccttcgccaacccccgcaacgcggcggccggttcgctgcgccagaaggacccc
aaggtcaccgccacccgcccgctgcacatggtggtgcacggcatcggcgcccgcgagggc
ttcgacatcgactgcctctcgcacgcctacgagctgctgcgcgagtggggcctgcccacc
gccaagtacaacaaggtggtcgactccctcgaaggcgtacgggagttcatcgcgtacttc
ggcgagcaccggcactccgtggagcacgagatcgacggcgtcgtcgtcaagctggacgag
atcccgctccagggccgcctgggctcgacctcccgcgccccgcgctgggccatcgcgtgg
aagtacgcgccggaggaggtcaacagcaagctggtcaacatccgcgtcggcgtcggccgc
accggccgcgtcaccccgtacgcccaggtcgagccggtcgtggtggccggctccgaggtc
gagttcgccaccctgcacaaccagaacgtggtcgaggcgaagggcgtcctgatcggtgac
acggtggtgctccgcaaggccggggacgtgatcccggagatcctcggcccggtcgtggac
ctgcgcgacggcaccgagcgggcattcgtcatgccgacccactgccccgagtgcggcacg
gagctgaagcccaccaaggaggcggacgtcgacgtccgctgccccaacgcccgctcctgc
cccgcccagctgcgcgagcgcatctcgtatctggccggccgcaagtgcctcgacatcgac
cacttcggttacgtggtcgccgccgcgctgaccgcaccgctggagcccgccgaaccgccg
ctgcgcgacgagggcgacctcttcggactgaccatggaggagctgcttccgatccgggcc
tacgtcctcgacccggacagcgggctgcccaagcgcgacccgaagaccggcgaggagaag
aaggccctggtcttcgccaaccagaagggcgagccgaagaagaacgccgtggcgatgctc
gacgccatcgaggccgccaagcaggccccgctcgcccgcatcctcaccgggctctccatc
cgccacgtcggcccggtcgcggcccgggagctggcccgccagttccggtccatcgaccgc
atcgaggaggccaccgagcaggagctggccgacgccgacggggtcgggccgatcatcgcg
gcctcggtcaagcagtggttcgccgaggactggcaccgcgagatcctgcgcaagtggcgc
gaggccggcgtccggatggaggacgagggagccggcgaggacgagggcccccggcccctc
gaagggctcaccgtcgtcgtcacgggcaccctgaccgggcacaccagggatggcgcgaaa
gaggcgctgcagagccggggagcgaaggtcaccggttccgtttccaagaagacggccttc
gtcgtcgtcggcgacaaccccggatccaagtacgacaaagcggtccagctgaaggtcccc
gtcctggacgaggccggcttcgccgtgctcctcaccgagggaccggacgccgcccgcgag
gcggcggtcccggccggggaaccggctccggaggagggcgccgcccccggagagtga
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