Seriola dumerili (greater amberjack): 111217541
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Entry
111217541 CDS
T05606
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111217541 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdu03041
]
111217541 (eftud2)
Spliceosome [BR:
sdu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111217541 (eftud2)
Complex C
U5 SnRNP specific factors
111217541 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
111217541
NCBI-ProteinID:
XP_022595175
UniProt:
A0A3B4VKM8
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLDAEDRDVDEGDEDDDDEPADADDDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKNKQFTLMEQELPATVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KCTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSIRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPQEGARNKIEHTYTGGLDSDLGEAMAECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgatgagtttgggaactatatcggtccagagctggactctgac
gatgatgaagatgatctggatgcagaggacagagatgttgatgagggcgatgaggatgat
gacgatgaaccggcagatgctgatgatgatgtcccaggcatggaggtggtcctgcatgag
gacaagaagtactatcctacagcagaggaggtttacgggcctgaggtggaaactattgtc
caggaggaagacacacaacctctcacagaacccatcatcaagcctgtgaagaacaagcag
ttcaccctgatggagcaagagttacctgccactgtttatgatatggaattccttgcagat
ctgatggacggtcctgagctgatccgtaacgtcaccctttgtggtcaccttcaccacggc
aagacctgttttgtggactgcctgattgaacagacacatccagaaatcaggaagagagat
gatgtggacctccgatacacagacattctctttacagaacaggagagaggagttggtatc
aagtgtacccctgtcacaatggtcctgccagactccagaggcaaatcttaccttttcaac
atcatggatacaccaggccacgtaaacttctctgatgaggtcacatctagcatccggatc
tcagatggtgttgtcctcttcatagacgcagcagaaggagtgatgctgaacacagagcgt
ctgatcaaacacgctgttcaggagcgtatggccatcaccatctgcatcaacaaggtggac
cggctcatcgtggagctcaaactgcctcccactgatgcttactataaactgcgccacatt
gtggatgaagtcaatggtttgctcagcacgtactccacagatgagaatttggtggtgtct
cctctccttggaaatgtgtgcttcgccagctctcagtacagcatctgcttcaccctaggg
tcctttgcaaagatctactcagacacctacggtgacatcaactataacgagtttgccaag
aggctctggggagacatttatttcaatcccaaaactcgcaagttcacaaagaaagctccc
agcagtaactctcagcgcagctttgtggaattcgttctggagccactctacaagatcctt
tcacaggtggttggtgatgtggacacgtctctcccccgagttctggatgagctggggatc
cacctgactaaagaggaactgaagctgaacattagacccctgctgagactggtctgcaac
cgcttcttcggagaatttactggctttgtggacatgtgcgtacaacacatcccctcacca
caagagggcgccaggaacaagatagagcacacctacacaggaggtctggactcagacctg
ggggaggccatggcggagtgcgaccctgatggccctttgatgtgccacaccactaagatg
tacagcactgaggatggggttcagttccatgcgtttggcagggtgctgagcgggaccatt
caggcaggccagcccgtcaaggtcctgggagagaactacacccttgaagatgaggaggac
tcccaggtctgcaccgtgggtcgcctgtggatctccgttgccagataccaaattgaagtg
aatcgagtacctgctggtaactgggtcctcatcgaaggctgcgaccagccgatcgtcaaa
accgccacaatcacagagcccagaggcaacgaagaagctcagattttcaggccactgaag
ttcaacactgcgtcagtgatcaagatcgcagtggagcccgtcaacccatcagagcttcct
aaaatgttggacggactgaggaaggtcaacaagagctatccatccctgaccacaaaggtg
gaggagtctggagaacacgttatcttaggcacaggagagctctacctggactgtgtcatg
cacgaccttcgcaagatgtactctgagatcgacattaaagttgccgaccctgttgtgact
ttctgtgaaacagttgtggagacatcatctctcaagtgctttgctgaaacgccgaacaaa
aagaataagatcaccatgattgctgagcccttggagaaggggctggctgaggacatagag
aacgaagtggtgcagatcacttggaacaggaagaagctgggagagtttttccagacgaag
tacgactgggatctgctggccgccagatctatctgggccttcggaccggacacaacgggg
cccaacattcttgtagacgacactctgccttctgaggtggacaaggcgctgctcggctca
gtcaaagacagcattgttcagggcttccagtggggcaccagggaaggacctctgtgtgat
gagcccatcagaaatgtcaagtttaagatcctggatgcagtcatcgctcaggagcctcta
cacagaggaggcggccaggtcatccctacggccaggagagtggtgtactccgctttcctc
atggccacgccaaggttgatggagccctattactttgtggaggttcaggctccggccgat
tgtgtgtctgctgtctatacagtgctggctcgaagaaggggtcatgtgacccaggatgca
cctattccagggtctcctctctacaccatcaaggctttcatcccagccatcgactccttt
ggcttcgagacagacctgcgcacacacacacagggacaggcctttgctctgtctgtgttc
caccactggcagatcgtgcctggtgaccccctggacaagagtatcgtgatcaggcctctt
gagcctcagcctgccccccacctggccagagagttcatgatcaagacccgaaggcgcaag
ggtctgagcgaagatgtgagcatcagcaagttcttcgacgatcctatgttgttggagctg
gccaaacaggacgtggtgcttaactaccctatgtga
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