Seriola dumerili (greater amberjack): 111225391 Help Entry 111225391         CDS       T05606                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism sdu  Seriola dumerili (greater amberjack) Pathway sdu04115   p53 signaling pathway sdu04145   Phagosome sdu04148   Efferocytosis sdu04350   TGF-beta signaling pathway sdu04510   Focal adhesion sdu04512   ECM-receptor interaction sdu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sdu00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     111225391   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     111225391  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     111225391    04148 Efferocytosis     111225391   09143 Cell growth and death    04115 p53 signaling pathway     111225391   09144 Cellular community - eukaryotes    04510 Focal adhesion     111225391   09142 Cell motility    04820 Cytoskeleton in muscle cells     111225391  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sdu04131]     111225391   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sdu00536]     111225391 Membrane trafficking [BR:sdu04131]  Endocytosis   Phagocytosis    Opsonins     111225391 Glycosaminoglycan binding proteins [BR:sdu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    111225391 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 TSP1_ADAMTS EGF_CA cEGF TSP1_CCN Laminin_G_3 EGF Motif Other DBs NCBI-GeneID:  111225391 NCBI-ProteinID:  XP_022605947 LinkDB All DBs Position Unknown AA seq 1171 aa AA seqDB search MMLCGIFLLVMLWSCEGARLAESRDDNSVYDLFDLARVNKRHHGVSLVKGADPYSPAYKV LNADLIPPVPDSSFRDLLDSIQTERGFLLLVNLKQFKKTRGSLLTIEKTDGSGPVFEIIS NGKNNTLDVVYSTMYQQQKVSIEDADLATGHWKNITLFVQDDRAQLFVGCEEINVSELDV PIYKVLSQEVADSARLRIGKGSVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSGATLTDV MTLDNPVNGSSPAIRTDYTGHKAKDLQSVCGFSCEDIASMFKELKGLGVIVKNLKNDLEK VSEASTIMIQNLNSGACYHNGIQYKDQDEWTMDSCTECTCQKSVTLCRKISCPLIPCANA TVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCEGTSVQT RDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGKDCQGEGRQ TEICQKSPCPINGGWGPWSPWDTCTVTCGGGIQTRKRLCSDPVPKYGGKDCVGDATMSHV CNKQECPVDGCLSNPCFPGAKCISFPDGSFRCGKCPLGYRGNGVICKDIDECKEVPDACH THNAVHRCENTQPGYNCLPCPARFSGPQPFGRGVEQATAKKQVCTPRNPCQDGSHNCNKN ANCIYLGVYSESMFRCECRPGYAGNGRICGEDTDLDGWPNTDLLCVENATYHCKKDNCPN LPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPREYNPAQYDADRDDIGDRCDNCVFE ANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPLEH NPDQIDSDSDLVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDN DGIPDEKDNCRLAYNPDQKDSDGDGRGDLCQYDFDQDNVLDIHDVCPENFDISETDFRRF QMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFINTDRDD DYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRNAL WHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRMMADSGNIFD KTYAGGRLGLYVFSQEMVYFSDLKYECRDDK NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgatgctgtgtggcatctttttgctggtgatgctttggagttgtgaaggcgcaagactg gcagagagtcgagatgataacagtgtgtatgacttatttgatctggcccgagtcaacaag agacaccacggagtgagtttggtgaaaggcgccgatccctacagccccgcatacaaagtc ctgaacgcagacctgatcccccccgtccccgacagctccttcagggacctcctcgactcc atccagactgagaggggcttcctcctcctggtcaacctgaagcagttcaagaaaaccaga ggcagccttttgaccatcgagaagactgacggatccggacccgtcttcgagatcatttcc aacggcaagaataacaccctggatgtggtctactccaccatgtaccagcagcagaaagtg tccatcgaggacgcggacttggccactggacactggaagaacatcacgctgttcgttcag gatgaccgcgcgcagctttttgtcggctgtgaggagatcaacgtgtcagagctggacgtg cccatctacaaagtgctgtcccaggaggtggcagacagcgccaggctcaggatcggaaag ggatctgtgaaggacagatttatgggagtcctccagaatgtgcgctttgtctttgggacc actcttgatgctatactgagaaataagggatgccagagcggagctaccttaactgatgtc atgaccttggacaaccctgtcaacggctccagccctgccattaggactgattacaccggc cacaaagccaaagatctgcagtctgtctgtggcttctcttgtgaggacatcgccagcatg tttaaggagctcaagggactcggtgtgattgttaaaaacctgaagaatgacctcgagaaa gtgtctgaggcgagcacaatcatgatacagaacctcaacagcggagcttgctaccacaac ggcatccagtacaaggaccaagatgaatggaccatggacagctgcactgagtgcacctgc cagaaatctgtcactttgtgtcgcaaaatctcctgccctctgatcccatgcgctaacgcc accgtgcccgatggagagtgctgccctcgctgtggaacaccgagtgactatgccgaggat ggatggtctccctggtctgaatggacccactgttcagtgacttgtggccgtggcatccag cagcgcggacgctcctgtgaccgcatcaacagcaactgtgagggcacctctgtccagacc cgtgactgctacccccaggaatgtgacaaacgcttcaaacaggatggtggctggagtcac tggtctccctggtcatcgtgctctgtgacctgtggtgagggggtcatcacccggatccgc ctctgcaactcccccacaccccagatgggtggcaaggactgccagggagaaggacgtcaa actgaaatctgccagaagtcaccttgtcctatcaatggaggctggggaccttggtcacca tgggacacctgcactgttacctgtggtggaggaatccagacccgcaaacgtctctgctct gaccccgttcccaaatacggtggaaaggattgcgttggtgatgccactatgtctcatgtg tgcaacaaacaagaatgtcctgttgatggttgtctgtccaacccatgcttccctggcgct aagtgcatcagcttccctgatggctctttcaggtgtggcaagtgtccgcttggctatcgt ggaaatggcgtcatctgcaaagacattgatgagtgtaaagaggttcctgatgcctgccac actcataacgcagtccatcgctgtgagaacactcagcctggttacaactgtctgccttgc cctgcacgtttctccggtcctcagcccttcggaagaggagtggaacaggcaactgctaaa aaacaggtttgcacaccccgcaacccttgccaggatggtagccacaactgcaataaaaat gcaaactgcatctacttaggcgtctactctgagtccatgttccgctgcgagtgcaggcca ggatatgccggtaatggccgtatctgtggagaggacactgacctggatggatggcccaac actgacctgctgtgtgtggagaatgctacctaccactgcaagaaggataactgtcccaac cttcccaactctggtcaggaagatcatgacaaagatggcctgggtgatgaatgtgaccat gatgatgacaatgatgggatccccgatgatagggacaactgtccaagagaatacaaccct gcccagtacgacgcagacagggatgatattggcgaccgctgtgacaactgtgtgtttgag gctaacaccgaccaaaccgacactgacaacaatggagagggtgatgcctgtgctgttgac atcgatggcgatggcattctgaatgagaacgacaactgcccttatgtttacaatgtggac cagagagatactgatagagatggcgtgggagaccactgtgacaactgccctctggagcac aaccctgatcagatcgactctgactcagatctcgtaggagacaagtgcgacaacaaccag gacattgacgaggacggtcaccagaacaacttggacaactgtccctacatccccaacgcc aaccaggcagaccatgacaaagatggcaagggtgacgcctgcgaccacgacgatgacaat gacggcattcccgatgaaaaagacaactgtcgactggcttataaccctgatcaaaaggac tctgatggtgatggccgcggtgacctgtgccaatacgattttgaccaagacaatgttttg gacatccatgacgtgtgtccagagaactttgacatcagcgaaacagacttccgcagattc cagatggttcctctggaccccaagggcacctctcagattgaccccaactgggtggtccgg catcagggcaaagagttggtgcagacagtcaactgtgatcccggcattgctgttgggttc gatgagttcagtgctgtggatttcagtggaacattcttcatcaacacggacagagatgac gattacgccgggttcgtgtttggctaccagtccagctcgcgcttctacacagtcatgtgg aaacagatcacacagacctactggtcccacacacccacaagagctcaaggctactctggc ctgtcaatcaaagtggtcaactccaccaccggccccggtgagcatctgaggaacgccctg tggcacaccggagacaccccaggacaggtgcgcactctgtggcacgaccctaagaacatt ggctggaaggacttcactgcctacaggtggcacctgacccacagacccaagactggactt attagagtggtcatgtacgaaggcaagagaatgatggccgattctggaaacatctttgac aagacgtacgctggtgggcgactaggcttgtatgtcttctctcaggagatggtttacttc tcagacctcaaatatgaatgcagagatgataaataa

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