Seriola dumerili (greater amberjack): 111232398
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Entry
111232398 CDS
T05606
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sdu04515
]
111232398
Cell adhesion molecules [BR:
sdu04515
]
Cadherins
Protocadherins
111232398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_FAT4_N
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
111232398
NCBI-ProteinID:
XP_022615621
LinkDB
All DBs
Position
Unknown
AA seq
829 aa
AA seq
DB search
MSYCNGPGMTKRMGYRDWRWQALWWHHFFLLWTSIDGQTRYSIPEELERGSVVGNIAKDL
GLGLSDIFDRKLRVASEAGKQYFSVDAGKGELVVNDRIDREALCGQSASCILPLQVVIEN
PLQLHRIEVEIRDVNDNAPSFLKSDHVIEIAESTVVGVRFPLESAEDPDVGSNGLKSYTL
SKDDCFILKVKEIENGRKIPELVLNKSLDREKKAIHNLFLIAMDGGNPVKSGTSKITITV
LDINDNVPLFENAFYKIAVQENTANGSFLISTKATDIDEGPNGEIEYSLGIHTPPSVLSL
FHIDAVTGDIYLKQQLDHEDQTSYRIDVSAKDKGFPKMEGHCSVQVDVLDVNDNAPEIVL
TSKPTSVPEDSRGGTVVALLSVRDLDSGDNGKVMLKLPIGSPFTLKPSFSNNYALVTSGP
LDRESSSHYDIEITATDSGSPPLSSKKTIPVSITDVNDNPPVFTQPSYNVYLKENGVPGS
ILYSVSASDLDFGENAKISYSILDSKVQDVSASSYVYINSDNGSIYSMHSFDYEKLKVFQ
IQVQAKDQGSPSLSSNATVHVFILDQNDNAPAVIYPSSAALGSLSHQRMPRSAKAGHLVT
KVTAVDADSGHNAWISYKLVEATDASLFTVNLYTGEVRTKRAVSEQDDSSQRLLIEIRDD
GEPVQSSTATVSIMLEDGLHEPILDLRQKVAEPSKKTGRITLYLILSLASVSVLSLLTFL
ILAVKCIRSSRSNGSCCMRRTDCDDYKNPNRNLQIQLNTDGPIKYVEVLGGDLLSQSQSF
RSCMSPMSEYSDFTLIKPSSTTDFKEVISVLDASLPDSTWTFESQQVSR
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgtcctattgtaacggaccggggatgacaaagagaatgggataccgagactggagatgg
caggcgctttggtggcatcatttctttctcttgtggacttcaatagacggacagactcgt
tacagcatcccagaggagctggagcggggctctgtggtaggaaacatagccaaagatctg
ggtttgggactttcagatatttttgaccgtaaactgcgagtcgcctctgaggctggtaag
cagtatttcagtgtggatgcggggaagggcgagctggtggtgaatgacagaatagacaga
gaggctttatgtggacaaagcgccagctgtattctacctctgcaggttgtaatagaaaat
ccattacaattgcaccggatagaagtggaaataagagacgtaaatgacaacgctcctagt
tttctcaaaagcgatcatgtaatagaaattgctgaatccaccgttgtaggcgtgcgtttt
cccttagagagtgcagaggatccagatgttgggagtaacggattaaagtcttacactcta
agcaaagacgattgctttattttaaaagtaaaagaaattgaaaatggtagaaaaataccc
gaattagtgttaaataaatcattagaccgggagaaaaaagcgattcataatttatttctt
attgctatggacggaggaaacccggtcaagtcaggaacttcaaaaataactataactgta
cttgatattaatgataatgtgccattattcgaaaatgctttttataaaattgctgttcaa
gaaaacactgcaaacggttcatttttaatttcaacaaaagcaacagacatagatgagggt
ccaaatggagaaattgagtactcgcttggcatacacacaccaccatcggtgctgtcattg
tttcatattgatgctgtaactggagatatatatttgaagcaacagttagaccacgaagat
caaacttcatatcgaatagacgtcagtgctaaagacaaaggcttccctaaaatggagggt
cactgcagtgtgcaggtggatgtcttagacgttaatgataatgctccagaaattgtgctg
acttcaaaacccacttctgtgcccgaagactctcgaggtgggacagtagtagctttgctc
agtgtccgtgaccttgattcaggtgataacggtaaagtgatgttaaagcttccgataggg
tctccctttactcttaaaccatcattttctaataattacgcactagttaccagtggtcct
ttagacagagagagctcctcacactatgatattgaaataactgccactgattcaggctct
cctcctctgtccagtaagaaaactataccagtcagcatcactgatgtgaatgacaaccct
cctgtattcactcagccctcctataatgtatatttaaaagagaatggggtaccaggatct
atactgtactcagtatcagcctctgacctggattttggtgaaaatgctaaaatctcttac
tctatactggactctaaagtgcaggacgtttctgcctcgtcgtatgtttacattaactca
gacaacggcagcatctacagcatgcactcgtttgactatgagaaactgaaggtgtttcag
attcaggttcaggcaaaggatcagggctctccgtctctcagcagcaacgccactgtccat
gtttttatcctggaccagaacgacaacgcccccgctgttatttacccctcctccgctgcc
ctgggctccctctctcatcagaggatgccccgctccgctaaagcgggtcacctggttact
aaggtgacggccgtggacgctgactcgggccataacgcctggatctcctacaaactggtg
gaggccacagacgcctctctgttcactgtcaatctgtacacaggggaggtgaggactaaa
cgcgctgtgtccgagcaggacgactcctctcagaggctgcttatagagatcagggacgac
ggggaaccggtccagtcctccactgccacggtgtccatcatgctggaggacggtctccat
gagcccatcttagacctccgacagaaagtggccgagcccagcaagaaaactgggagaatc
accctttatttgattctgtctctggcctcggtgtccgtgctgtctctgttgacttttctc
atcttagcggttaaatgcatcaggagcagcagaagcaacggtagctgctgcatgagacgg
accgactgtgatgattacaagaaccccaacagaaacctgcagattcagctcaacactgat
ggacctataaagtacgtggaggtcctgggaggagacctgttgtctcagagtcagtccttc
aggtcctgcatgtcaccaatgtcagagtacagtgatttcactctgattaagcccagcagc
accactgactttaaggaggtgatcagtgtcctggatgcgtctttacccgacagcacctgg
acctttgagagccagcaggtgagcagatga
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