Seriola dumerili (greater amberjack): 111232551
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Entry
111232551 CDS
T05606
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sdu04515
]
111232551
Cell adhesion molecules [BR:
sdu04515
]
Cadherins
Protocadherins
111232551
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
PDGF
Motif
Other DBs
NCBI-GeneID:
111232551
NCBI-ProteinID:
XP_022615846
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MTKKIGYRDWRWQALWWHHFFLLWTTIDGQIRYSIPEELKQGSVVGNLAKDLGLGLSDIF
DRKLRVASEAGEQYFSVDAGKGELVVNDRIDREALCGQSASCVLPLQVVAENPLQSHRIE
IEIRDINDNSPHFLTQEINLKIPESVALGKRFPLESAEDPDVGSNSLKTYSLSKNDYFSL
KFKDTKNGKAVPELVLEKPLDREKNALHQLLLTALDGGNPVTSGTCKITITVLDINDNFP
VFDENEYKVSLKENSTKGTFVIKLTAADADDGLNGEVKYAFGSRTPDFVLSTFEINDMTG
EIVLKGILDYESYRSYLIDITAKDKGVPEMEGHCRVQLDVEDINDNAPEIVLTSKPSPVR
EDAPSDTVVALISARDLDSANNGKVKLQLPKHSPFTLKPSFSNNYELVTSGPLDRESFAE
YNVEITATDSGSPPLSSKKTIPVSITDVNDNPPVFTQPSYNVYLKENGVPGSILYSVSAS
DLDFGENAKISYSILDSKVQDVSASSYVYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDQ
GSPSLSSNATVHVFILDQNDNAPVVIYPSSAALGSLSHQRMPRSAKAGHLRMPRSAKAGH
LVTKVTAVDADSGHNAWISYKLAEATDASLFTVNLYTGEVRTKRAVSEQDDSSQRLLIEI
RDDGEPVQSSTVTVSILLEDGLHEPILDLRQKAAEPSKKTGRITLYLILSLASVSVLSLL
TFLILAVKCVRSSRSSGSCCMRRTDCDDYKNPNRNLQIQLNTDGPIKYVEVLGGDMLSQS
QSFRSCMSPMSEYSDFTLIKPSSTTDFKEVISVLDASLPDSTWTFESQQPKPVREDAPSG
TVVALISARDLDSADNGRDVSASSYVYINSDNGSIYSMQSFDYEKLKVFQIQVQAKDQGS
PSLSSNATVHVFILDRNDNAPAVIYPSSAALGSLSHQRMPRSAKAGHLVTKVTAVDADSG
HNAWISYKLAEATDASLFTVNLYTGEVRTKRAVSEQDDSSQRLLIEIRDDGEPVQSSTVT
VSILLEDGLHEPILDLRQKAAEPSKKTGRITLYLILSLASVSVLSLLTFLILAVKCVRSS
RSSGSCCMRRSDCDDYKNPNRNLQIQLNTDGPIKYVEVLGGDMLSQSQSFRSCMSPMSEY
SDFTLIKPSSTTDFKEVISVLDASLPDSTWTFESQQND
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaaaataggataccgagactggagatggcaggctctttggtggcatcatttc
tttctcttgtggactacaatagacggacagattcgttacagcatcccggaggaactaaaa
cagggctctgtggtaggaaatctagccaaagatctgggtttaggattatctgacattttt
gatcgtaaactgcgagtcgcctctgaggctggtgagcagtatttcagtgtggatgcgggg
aagggcgagctggtggtgaatgacagaatagacagagaggctttatgtggacaaagcgcc
agctgtgttctacctctccaagtagttgctgaaaatcctttgcagtctcatcgaattgaa
atagaaataagagacataaatgacaattcaccacattttcttacacaggagataaacctt
aaaataccagaatcagttgcgcttggcaaacgctttcctttggagagcgcagaggaccca
gatgttggaagcaattctttgaaaacctactctctaagcaaaaacgattatttttctctc
aaatttaaagacacaaaaaacggaaaagccgtcccagaattagtgttagaaaagccatta
gaccgagaaaagaatgctcttcatcagctgctgttaacagcattagatggaggaaaccca
gtcacctcgggaacgtgtaagatcactatcactgtacttgatataaacgacaattttcca
gtgttcgatgaaaatgaatacaaagtctctttaaaggagaacagcaccaaaggaacattt
gttattaaacttacagctgcagatgctgacgatggtcttaatggtgaagttaaatatgct
tttgggtcccgcactccagactttgtgttatcaacatttgaaatcaacgacatgacaggt
gaaattgtattaaaaggaatattagattatgaaagctatagatcatatcttatcgatata
actgctaaagataaaggcgtccccgaaatggagggtcactgtcgtgtacagctggacgta
gaggacataaacgataacgctccagaaattgtgctcacttcaaaacccagtccagtacgc
gaggacgcgccaagtgacacagttgtggctttaatcagtgcacgagacctcgattccgct
aataacggtaaagtgaaactacagctgcccaaacattctcctttcactcttaaaccatca
ttttctaataattatgaactggttaccagtggtcctttagacagagagagtttcgcagag
tataatgtcgagataactgccactgattcaggctctcctcctctgtccagtaaaaaaact
ataccagtcagcatcactgatgtgaatgacaaccctcctgtattcactcagccctcctac
aatgtatatttaaaagagaatggggtaccaggatctatactgtactcagtatcagcctct
gacctggattttggtgaaaatgctaaaatctcttactctatactggactctaaagtgcag
gacgtttctgcctcgtcgtatgtttacattaactcagataacggcagcatctacagcatg
cactcgtttgactatgagaaactgaaggtgtttcagattcaggttcaggcaaaggatcag
ggctctccgtctctcagcagcaacgccactgtccatgtttttatcctggaccagaacgac
aacgcccccgttgttatttacccctcctccgctgccctgggctccctctctcatcagagg
atgccccgctccgctaaagcgggtcacctgaggatgccccgctccgctaaagcgggtcac
ctggttactaaggtgacggccgtggacgctgactcgggccataacgcctggatctcctac
aaactggcggaggccacagacgcctctctgttcactgtcaatctgtacacaggggaggtg
aggactaaacgcgctgtgtccgagcaggacgactcctctcagaggctgcttatagagatc
agggacgacggggaaccggtccagtcctccaccgtcacggtgtccatcctgctggaggac
ggtctccatgagcccatcttagacctccgacagaaagcggccgagcccagcaagaaaact
gggagaatcaccctttatttgattctgtctctggcctcggtgtccgtgctgtctctgttg
acttttctcatcttagcggttaaatgcgtcaggagcagcagaagcagcggtagctgctgc
atgagacggaccgactgtgatgattacaagaaccccaacagaaacctgcagattcagctc
aacactgatggacctataaagtacgtggaggtcctgggaggagacatgttgtctcagagt
cagtccttcaggtcctgtatgtctccaatgtcagagtacagtgatttcactctgattaag
cccagcagcaccactgactttaaggaggtgatcagtgtcctggatgcgtctttacccgac
agcacctggacctttgagagccagcagccaaagccagtacgcgaagatgcaccaagtggc
accgtagtggctttgatcagtgcacgagaccttgactctgccgataacggcagagacgtt
tctgcctcgtcgtatgtttacattaactcagataacggcagcatctacagcatgcagtcg
tttgactatgagaaactgaaggtgtttcagattcaggttcaggcaaaggatcagggctct
ccgtctctcagcagcaatgccactgtccatgtttttatcctggaccggaacgacaacgcc
cccgctgttatttacccctcctccgctgccctgggctccctctctcatcagaggatgccc
cgctccgctaaagcgggtcacctggttactaaggtgacggccgtggacgctgactcgggc
cataacgcctggatctcctacaaactggcggaggccacagacgcctctctgttcactgtc
aatctgtacacaggggaggtgaggactaaacgcgctgtgtccgagcaggacgactcctct
cagaggctgcttatagagatcagggacgacggggaaccggtccagtcctccaccgtcacg
gtgtccatcctgctggaggacggtctccatgagcccatcttagacctccgacagaaagcg
gccgagcccagcaagaaaactgggagaatcaccctttatttgattctgtctctggcctcg
gtgtccgtgctgtctctgttgacttttctcatcttagcggttaaatgcgtcaggagcagc
agaagcagcggtagctgctgcatgagacggtccgactgtgatgattacaagaaccccaac
agaaacctgcagattcagctcaatactgatggacctataaagtacgtggaggtcctggga
ggagacatgttgtctcagagtcagtccttcaggtcctgcatgtctccaatgtcagagtac
agtgatttcacactcattaagcccagcagcaccactgactttaaggaggtgatcagtgtc
ctggatgcgtctttacccgacagcacctggacctttgagagccagcagaacgactaa
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