Seriola dumerili (greater amberjack): 111233640
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Entry
111233640 CDS
T05606
Symbol
trpc6
Name
(RefSeq) short transient receptor potential channel 6
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
111233640 (trpc6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sdu04040
]
111233640 (trpc6)
Ion channels [BR:
sdu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
111233640 (trpc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
PKD_channel
Ank
Ank_4
SMIM5_18_22
Motif
Other DBs
NCBI-GeneID:
111233640
NCBI-ProteinID:
XP_022617222
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MMLRQVMAKPRRQALRGAGYLFHAQSSSCLSMTEELFLDAAEYGNIPEVRRMLEELPDLN
VNCVNYMGQSALQLAVANEHLEVTKLLLRKKDLARIGDALLLAISKGYIRIVEAILSHQA
FVDSQRLTNSPSQAETQDDFFAYDEDGTRFSHDITPIILASQCHEYEIVHILLMKGACIE
RPHNYFCQCRTCSEQQRHDAFSHSQSRINAYKGLASPAYLSLSNEDPVMAALELSNELAV
LANIEKEFKNDYKKLSMQCKDFVVGLLDLCRNTEEVEAILNGDIESCQNTEIFGRQNLIR
LKLAIKYEVKKFVAHPNCQQQLLSIWYENFSGLRQQTTAVKILLVLGVAIGLPVLAFMYW
IAPSSKLGKLMSGPFLKFVAHAASFMIFLCLLVMNAADRFEGTSLLPNMTIHDYPSQLFR
MKTTPFTWMEILIISWVIGKIWEECKDLWSQDIREYISEPWNLLDFSILAIFMTSFIARL
MAFWHAYCAQCYVDENYTDLSNMTLPFEIQYFQLARIHWVPSDPQLISEGLYAIAVVLSF
SRIAYILPANESFGPLQISLGRTVKDIFKFMVIFITVFVAFMVGMFNLYSYYLGAKHNDA
FTTLEESFKTLFWAIFGLSEVKSVVINIDHKFIENIGYILYGVYNIIMVIVLLNMLIAMF
NSSFQEIEDDADVEWKFARAKLWFSYFEYGGTLPVPFNLVPSPKSVVSLLLGIRKFLWAA
PQEDKSKESSNDEMELNKLRQQEDLSTEASLGPTHHQKIMNRLIKRYIVKAQRDKDNDEV
NEGELKEIKQDISSLRYELLERENRDMETLTELIRQLGEVLHVRQKEEQRHKLSMHS
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgcggcaggtcatggccaaaccccggagacaagctttacggggagctggatac
ctgtttcatgcccaatcctcctcctgtctttctatgacagaggagcttttcttagatgct
gcagaatatggtaacattcctgaagtgaggcggatgctagaggagctgccagacctcaat
gtcaactgtgtaaattacatgggccaaagtgcactgcagctggcagttgccaatgagcat
ttagaggtgactaaactcctacttaggaagaaagaccttgctagaataggagatgctttg
ctgttagccatcagtaaaggctacatccgtatagtggaggccatactgagccaccaggcc
tttgtggacagtcagaggctcactaacagtccaagccaggcagaaacacaagatgacttc
tttgcctacgatgaggatggcacacgtttctctcacgacatcactcccatcatcctggct
tcccagtgccacgagtatgaaatcgtgcatattcttctcatgaagggggcctgtatagag
aggccccataactacttctgtcagtgcaggacctgcagcgagcagcagaggcatgacgct
ttcagccattcacaatcccgcatcaatgcatataaaggtctggctagtccagcatatctg
tccctctccaatgaagaccctgtgatggcagctctggagctgagcaatgagcttgcagtt
ctagccaacattgagaaggagttcaagaatgattacaagaaactgtccatgcagtgtaaa
gatttcgtggtgggactcctggatttgtgtcgaaacacagaggaagtggaagccatctta
aatggggacattgaatcatgtcaaaacacagagatctttggcagacaaaaccttatcagg
ttaaaacttgcaataaagtatgaagttaaaaagtttgtagcacatcccaactgccagcag
caactcctctccatctggtacgagaacttttctggactacgtcagcaaaccacagcagtt
aaaatcttacttgtccttggtgtagccattgggttgcctgtcctggcctttatgtactgg
atagcaccgtcaagtaagttagggaaactcatgtctggacctttcctgaagtttgtggcc
cacgcagcttcctttatgatattcctttgcctgctggtcatgaacgcagcagaccgcttt
gagggaacatccctgctacctaacatgaccatccacgactacccatcgcagctgtttcgt
atgaagaccacccccttcacctggatggagattctcatcatatcctgggtcatagggaag
atctgggaagaatgtaaagatctttggtcgcaggacatccgggaatacatctctgaacct
tggaaccttcttgactttagtattttggccatatttatgacctctttcattgccagatta
atggctttctggcatgcatattgtgcccagtgttatgttgatgagaactatactgacctg
tccaatatgaccttgccctttgagatacagtatttccagctggctcgaatccactgggtg
ccctctgacccgcaactcatttctgaaggcctctatgcaatcgcagttgtgctgagtttc
tctcgcattgcatacatcctgcctgccaatgagagctttgggcctttgcagatctctcta
ggaagaactgtaaaagacatctttaagtttatggtgattttcataacagtttttgtggct
ttcatggtgggaatgttcaatctgtactcgtattacctcggagccaagcacaacgatgca
tttacaacgcttgaagagagctttaaaacattattttgggccatctttggcttgtcagaa
gtgaaatcagtggtcatcaatattgaccataagttcattgagaatattggctatattctg
tacggagtgtacaacatcatcatggtgattgtcttgctgaatatgctcattgccatgttc
aacagctccttccaagaaattgaggatgatgctgatgttgagtggaagtttgccagagct
aagctctggttctcgtactttgagtatggcggcacgctgcctgtgcccttcaaccttgta
ccgagccctaagtctgttgtttccctcctgctggggataaggaagtttctctgggctgca
cctcaagaagacaaaagcaaagaaagttcaaatgatgagatggagcttaacaagttgagg
caacaggaagatctgagtacggaagcatcacttggtccaacccaccaccagaagattatg
aatcgcctcatcaaaagatacatcgtaaaagcacaaagagacaaagataacgatgaagtg
aacgaaggtgaactgaaagagatcaaacaagacatctccagtctccgctatgagctgctg
gagagggagaaccgtgacatggagacactgacagagctcatcaggcaactgggagaagtc
ttgcatgttcggcagaaagaagagcagaggcacaagctgtcaatgcattcctaa
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