Seriola dumerili (greater amberjack): 111234356
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Entry
111234356 CDS
T05606
Symbol
slit1
Name
(RefSeq) slit homolog 1 protein isoform X1
KO
K06838
slit 1
Organism
sdu
Seriola dumerili (greater amberjack)
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sdu00536
]
111234356 (slit1)
Glycosaminoglycan binding proteins [BR:
sdu00536
]
Heparan sulfate / Heparin
Axon guidance molecules
111234356 (slit1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRR_1
hEGF
LRRNT
LRR_9
LRRCT
EGF_TEN
LRR_14
LRR_EndoS
EGF_Teneurin
LRR_NXF1-5
EGF_DL_JAG
EGF_3
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
111234356
NCBI-ProteinID:
XP_022618118
LinkDB
All DBs
Position
Unknown
AA seq
1577 aa
AA seq
DB search
MPVRGSCFGAGMGRLARLPLWMWVVMLSALLMGNASACPALCACSGTTVDCHGLGLKTMP
RSIPRNTERLELNGNNLTRITKSDFAGLKYLRVLQLMENQITVIERGAFDDMKELERLRL
NRNQLQQLPELLFQKNPALSRLDLSENFIQSIPRKAFRGATDIKNLQLDKNHISCIEDGA
FRALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLAQWLRQRPTI
GLFTQCTGPPELRGLNVAEVQKHEFSCSGHQESNSLQPCSTGGGSCPAMCTCSNNIVDCR
GKGLTAIPANLPDSMAEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGL
RSLNSLVLYGNKITDLPKGVFDGLYALQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNK
IQTLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKR
IGQIKSKKFRCSAKEQYFIPGTEDTRLSNACNSDPVCPPKCRCESNVVDCSNLKLTKIPE
HIPSSTTELRLNNNEITTLEATGVFKNLSQLKKINLSNNKITEIEDGAFEGASSVNELHL
TANQIDSVRSGMFRGLEGLRMLMLRNNKISCVHNDSFTGLHNVRLLSLYDNQLTTITPGA
FDTLQTLSTLNLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPD
FRCEEGQEESSCVPRPQCPSECTCLETVVRCSNKHLHTLPKGIPRNVTELYLDGNQFSVV
PKELSAFKYLQLVDLSNNKINSLTNSSFANMSQLTTLILSYNSLRCIPKMAFSGLHSLRL
LSLHGNEVSELPDGIFNDVASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCAGP
QGMEGKLLLTTPAKKFECTGELLCRTRNITPPVTLVFTIDSYRFDISLGDVDTAVLAKCN
PCLSSPCLNQGICHSDLVEIYRCSCPPGFKGKNCETALNACVNNPCANGGTCQVNEREEG
EYSCTCPLGFEGPTCQSNIDDCEDNDCENGATCIDGVNNYTCFCPPYYTGDMCEEMEDVC
APGRSPCQHQSTCLITSAGPKCVCSPGYVGDDCSVDYNDCEEHRCQNGAQCVDELNGYSC
VCPEEYSGQLCEVPPSLLSLCELADCQNNAPCVERGGRALCQCPPEFGGPRCEKLVSVNF
IDRDSYLLLSDLKNWPQANITLQVSTAEDNGILLYNGDNDHIAVELYQGHVKVSYDPGSQ
PGHAIYSTETINDGQFHTVELVTFDQMVNLSIDGGLPTTMDSFGAVRPLNGEAPLYVGGR
GPLQNTPPSSAGMPVDVHSGAFRLWQLQNGSSFHGCIQNLYINNELQDFTKTQMKPGVVP
GCEPCKKIYCVHGICQPDGVQGPVCHCQPGWSGPHCDQPATNPCQGSKCVHGKCIPLDAQ
SYRCECVEGYRGALCNQQGELFNPCRRLSCKHGRCQISDTGDAYCHCESGYTGELCDTES
ECRGEPVRDFYQVQRGYAICQTTRVVSWVECTGACDTGACCASQRMKRRKYTFECSDGTS
FSEEVEKTIKCGCVGCM
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttagaggtagctgttttggggcaggcatgggcaggctggccaggctgccactc
tggatgtgggtggtgatgctctctgccctgctcatgggcaatgccagtgcctgcccagcc
ctgtgtgcctgcagcggcaccacagtagactgccatggactgggtctcaaaaccatgcca
aggagtatcccccgcaacactgaaagactggagctgaatggaaataacctcacacgcatc
accaagagtgactttgctggactcaagtacctccgagttctgcagctgatggagaatcag
attactgtgatcgagcgtggggcttttgatgacatgaaggagctggagagactgcgactg
aaccgtaatcaactgcagcagcttcctgagctgctgtttcagaagaaccctgccctgtct
cgactagatctgagtgagaacttcatccagtccatccccaggaaagcattcagaggagct
acagacatcaaaaaccttcagctggataaaaaccacatcagctgcattgaggacggagcc
ttcagagctctcagaggcttggaagtgctaacgctgaacaacaacaacatcagcagcatc
ccagtatccagcttcaaccacatgcccaaactacgaaccttccgcctccactccaacaat
ctgaactgtgactgtcacctggcctggttggcgcagtggctcagacagaggcctacaatt
ggtctattcacccagtgtactgggccccctgagctcagaggactcaatgtggcagaggtg
cagaaacatgaattcagctgctcaggtcaccaggagtctaacagcctgcagccgtgcagc
acaggcggaggctcgtgccctgccatgtgcacctgcagtaacaacattgtggactgtaga
gggaaaggtctcaccgccatcccagccaacctgcctgacagcatggccgagatacgtctg
gagcagaatgggattaagtctgttcctcccggagccttctctccctacaagaaactgcgt
aggatagacctgagtaacaaccagatctcagagatagctcctgatgccttccagggcctg
cgctccctcaactctctcgtcctgtatggaaataagatcaccgacctgcccaagggggtg
tttgacggcctctacgccctgcaactgctgttgctgaatgccaataagattcactgcgtt
cgtgccaatgccttccaggacctgcagaatctctcgctgctatcactctatgacaacaag
atccaaaccctcgccaagggcaccttcacttcactacgagccatacagacccttcacctg
gcccagaacccatttatttgtgactgtaatctgaagtggctggcagattacctacgctcc
aaccccattgagaccagcggcgcccgctgtgccagccctcgcagactcgcaaacaaacgt
atcggacagatcaagagcaagaaattccgctgctccgccaaagagcagtacttcatccca
ggtacagaggacacccgtctgagtaatgcctgtaacagtgacccagtgtgtccacccaag
tgccgctgtgagtcaaacgtggtggactgctccaacctgaagctcaccaagatccctgag
cacatcccttcatccaccactgaactccgcctcaacaacaatgagatcaccactctggag
gcaactggagtttttaagaacctttcccagctgaagaaaattaacctcagcaacaataag
atcacagagattgaggatggggcgtttgaaggcgcatcgtctgtcaatgagcttcatctc
acagccaatcagatcgactcggtacgaagtgggatgttccgtggccttgagggactgcgg
atgctgatgctgaggaacaacaagatcagctgtgtccataacgacagtttcacagggctg
cacaacgtccgtctgctgtctctgtacgacaaccagctgaccactatcactcccggagcc
ttcgacaccctgcagaccctctccacccttaacctcttggccaactccttcaactgtgac
tgccggctggcgtggctcggtgattggctgaggagcaggaagattgtgacaggtaaccct
cgctgccagcgtcccgccttcctcaaggagatcccgctacaggacgtggctctgcctgac
ttccgctgtgaggagggccaagaggagtcaagctgtgtgcccagaccccagtgtcccagt
gaatgtacttgcctggagactgtagtgcgctgcagtaacaagcacctccacacactgccc
aaaggcatccccagaaacgtgactgaactgtatttggatggaaaccagttcagtgttgtg
ccaaaggaactgtcagccttcaaatacctacagctggtagatctgagcaacaacaagatc
aactctctgaccaactcgtccttcgctaacatgagccagctcaccaccctaatcctgagc
tacaactccctgcgttgtatccccaaaatggccttcagtggactgcactctctccgactg
ctgtctctccatggcaacgaagtctcagagcttcctgatggcatcttcaacgatgtggcc
tctctctcccacttggcgattggtgccaacccattgtactgtgactgtcgcctgcgctgg
ttatctgactgggtgaagacaggctacaaagagcctggaatcgcccgctgtgctggccca
cagggcatggagggaaaactgctgctcaccacacctgcaaagaagtttgaatgtacaggt
gagttattgtgtcgtacacggaatataacccccccagtaacactagtattcacaattgat
tcttatcggtttgacatttccctaggagatgtggacactgcagtgctggccaagtgtaac
ccctgtctgtccagtccctgtctgaaccaaggcatctgtcacagcgacttggtggagatc
tacaggtgcagctgtcctccaggattcaagggcaagaactgtgagacagctctgaacgcc
tgtgtgaataacccatgtgctaacggaggaacctgccaagtgaatgagagagaggaggga
gaatacagttgcacatgtccactgggctttgagggccccacttgccaaagcaacattgac
gactgcgaagacaacgactgtgagaatggagcaacctgcatcgatggagtcaacaactac
acttgtttttgtcccccctactacacaggggacatgtgtgaagaaatggaggatgtgtgt
gccccaggacggagcccctgccaacatcagtctacctgcctcatcacctccgctggaccc
aagtgtgtgtgctctcctggttatgttggtgatgactgcagtgtagactataatgactgt
gaggagcatcgctgtcagaatggagctcagtgtgtggatgagctaaatggatactcctgc
gtttgtcctgaagaatacagtggtcagctgtgtgaggttcccccatctctactgtccctg
tgtgagctggctgactgccagaacaatgccccatgtgtggagcgaggcggacgggccctc
tgccagtgtcctccagagtttggggggccacgctgcgagaagctcgtcagtgtcaacttc
attgacagagactcctacttactgctctctgacctcaagaactggcctcaagctaacatc
accctgcaggtgtcaacagctgaggataatggaattttgctgtacaatggagacaatgat
catattgcagtggagctctaccaaggtcatgtcaaggtcagctatgaccccggcagccag
ccaggccatgccatctacagtactgagaccatcaacgatggccagttccacacagtggag
ctggtgacctttgatcagatggttaacctgtccattgacgggggtctccctaccacaatg
gacagctttggggcggtgcggcccctcaacggggaggctccgctatacgtggggggtagg
ggccctctccagaacacacctccctcctctgcaggcatgccagtggacgtacactcgggt
gctttccgtctttggcagctccagaacggttccagtttccatggctgtattcagaacctg
tacatcaacaacgaactccaggacttcaccaagacccagatgaagcctggcgtggtaccg
ggctgcgagccctgcaagaagatctactgtgtacatggcatctgccagcctgatggggtc
cagggaccagtgtgccactgccagccaggctggagcgggccgcactgtgaccagcctgct
accaacccctgccagggcagcaagtgcgtccatggaaagtgcatcccactggacgctcag
tcttaccgctgcgagtgtgtggagggttaccgcggtgccctttgtaaccagcaaggggag
ctgttcaacccctgccgtcgcttgtcctgcaaacatggtcgctgccagatctcagacaca
ggagatgcctactgtcactgtgaaagtggctacaccggggaactttgtgacacagagtct
gagtgccgaggggagcctgtgcgagacttctaccaggtacagcgaggctacgccatctgc
cagacaacacgtgtcgtctcttgggtggagtgtaccggagcttgcgacacgggggcctgc
tgcgccagccagcgaatgaagcgccggaaatacacctttgagtgcagcgatggaacctcc
ttcagcgaggaggtggaaaagaccatcaagtgtggctgcgtgggctgcatgtag
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integrated database retrieval system
