Seriola dumerili (greater amberjack): 111236186
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Entry
111236186 CDS
T05606
Name
(RefSeq) LOW QUALITY PROTEIN: thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
sdu
Seriola dumerili (greater amberjack)
Pathway
sdu04115
p53 signaling pathway
sdu04145
Phagosome
sdu04148
Efferocytosis
sdu04350
TGF-beta signaling pathway
sdu04510
Focal adhesion
sdu04512
ECM-receptor interaction
sdu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sdu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
111236186
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111236186
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
111236186
04148 Efferocytosis
111236186
09143 Cell growth and death
04115 p53 signaling pathway
111236186
09144 Cellular community - eukaryotes
04510 Focal adhesion
111236186
09142 Cell motility
04820 Cytoskeleton in muscle cells
111236186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdu04131
]
111236186
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sdu00536
]
111236186
Membrane trafficking [BR:
sdu04131
]
Endocytosis
Phagocytosis
Opsonins
111236186
Glycosaminoglycan binding proteins [BR:
sdu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111236186
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
Laminin_G_3
cEGF
TSP1_ADAMTS
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
111236186
NCBI-ProteinID:
XP_022620571
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMLWTCESARVAESRDDNSVYDLFELIQVPKKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKQDGSGPVFEIVS
NGKANTLDILFSTENKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYAGCEEVNTAELDA
PIQSILTQETPASARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSSMTSDTM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKSLGVVVKELSNDLRKLTD
ENKLIMTRIGIRSGVCIHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGGWSHWSPWSSCSVTCGSGVITHIRLCNSPTPQFGGKDCEGEGRQT
EKCQMSPCPINGNWGPWSPWDTCSLTCGGGDQTRKRLCNDPAPKYGGKECVGEATETQKC
NKKACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDVDECKEVPDACFE
FNGVHRCENTEPGYNCLPCPPRYSGPQPFGRGVEQAAAKKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GVPDEKDNCRLAFNPDQKDSDGDGRGDACKDDFDQDNVPDIYDVCPENFGISETDFRQFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacagggatatttttgctgttgatgctttggacctgtgagagtgccagagtc
gcagagagccgagacgacaatagcgtgtatgacttgtttgagctcatccaagtccccaag
aagaaccatggggtcaccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaatccggacctgatccccccggtccccgagagcgcctttagggacctgatcgattcc
atacatgccgagaggggattcctcctgctgctcaacttcaagcagttcaaacggaccagg
ggaagcctcctgaccgtggagaagcaggacggttccggacccgtgtttgagatcgtctcc
aacggcaaggcgaacaccttggacatacttttctccaccgagaacaagcagcaggtggtt
tccatcgaagatgtggatctggccacgggacactggaagaatatcaccttgttcgtgcag
gaggaccgggcgcagctgtacgcgggatgcgaggaggtgaacaccgcggagttggatgcg
cccatccagagcatcctgacgcaggagacgccggccagcgcgcggctcaggattggcaaa
ggagcagtgaaagacaggttcatgggggtcctacaaaacgtgcggtttgtgttcggaacc
acactggatgccatcctccgcaacaaaggatgccaaagctcaatgacgtctgacaccatg
atcctggagaacctcaacggctcctcagccatcagaacagagtacactggacataagact
aaagacctgcagatggtctgtggcttctcctgcgaggacctggtcagcatgtttaaggag
ctgaagagcctcggtgtggtggtcaaggagttatccaatgatctccgcaagctgacggac
gagaacaagctgattatgacccgcattggcattcgcagtggcgtctgcatccacaacggc
atcgtgcacaagaacaaagacgagtggaccgtcgatgactgcaccgagtgcacttgccag
aactctgctactgtgtgccgcaagatctcctgccccctgatcccctgcgctaacgctact
gttcctgatggagagtgctgcccccgctgtggaacaccgagcgactatgcagaggacggc
tggtcgccgtggtctgaatggacccattgttccgtgtcatgtgggcggggcatccagcag
cgtgggcgctcctgcgaccgtatcaataacaactgtgagggcacctctgtgcagacccgt
gactgctacctccaggagtgtgacaaacgcttcaagcaagacggtggctggagccattgg
tcaccctggtcttcctgttccgtcacctgtggttctggtgtcatcacccatatccgcctc
tgcaactcccccaccccccagtttggaggcaaggactgcgagggagagggccgacaaact
gagaagtgtcagatgtctccgtgccccatcaatggcaactggggaccatggtcaccatgg
gatacctgctctctcacctgcggaggtggtgaccagactcgtaaacgcctgtgcaatgac
cccgcaccaaaatacggtggcaaagagtgtgttggtgaagccacagagacccagaagtgt
aacaagaaagcttgccccattgatgggtgcctgtccaacccctgctttgctggagccaag
tgcaccagtttccctgatggttcatggaagtgtggaaagtgtccagctggctacactggc
aatggtatcaagtgtaaagatgttgatgagtgcaaagaggtcccagatgcttgctttgag
tttaatggtgtgcaccgctgtgagaacaccgaacctggttacaactgtctgccctgccct
cctcgctactcaggaccccagccctttggcagaggtgtggagcaggctgctgctaagaaa
caggtgtgcacaccccgtaatccctgcctcgatggtagccacgactgcaacaaaaacgcc
cgctgcaactaccttggacacttcgctgatcccatgtaccgctgtgagtgcaagcccggt
tatgctggcaacggacatatttgtggagaggacacagacctggatggatggccgaatgct
gacctggtttgtgtggagaatgccacctaccactgcaaaaaggacaactgccccaacctc
cccaactctggccaggaagattacgataaggacggcattggagatgcttgtgataatgat
gacgacaacgatggcattcctgatgatagggacaactgtccattcgtctacaaccccagg
cagtatgattatgaccgtgatgacgtaggtgaccgctgtgacaattgcccctacaacagt
aacccagaccagacagacacagacaacaatggagagggagatgcctgtgctgtggacatc
gatggtgatggtatactaaatgaaaaagacaactgtccctatgtgtacaatgtggaccag
agagacacggatctggacggagtgggagacatgtgcgataactgccctctggaacataat
cctgatcaggtggattcagatgatgaccgtgttggagataagtgtgatagcaaccaggac
attgatgaggatggacatcagaacaatctggacaactgcccatacatccccaatgccaac
caggctgaccacgacaaagacggcaagggagacgcctgcgaccatgatgacgacaacgat
ggtgtccctgatgaaaaggacaactgcagactggccttcaaccctgaccaaaaagactct
gatggtgatggccgtggagatgcttgcaaagatgactttgaccaagacaatgtgcctgac
atctatgacgtgtgcccagagaactttggcattagtgagacagacttccgccagttccag
atggttccgttggacccgaaaggcacctcccagattgatcctaactgggttgtccgccat
cagggcaaagagctggttcagactgtaaactgtgaccctggcattgctgtcgggtaccac
gagttcaatgcagtggatttcagtgggactttcttcatcaacacagagagggatgatgat
tatgccggctttgtgtttggctaccaatccagttccaggttctatgtggtgatgtggaag
caaattacgcagacctactggtcgaataaacccaccaaggcccagggttactctggcctg
tccattaaagtggttaactccaccactggcccaggagagcacctcagaaatgccctctgg
cacaccgggaatacccctggacaggtccgcactctctggcatgaccccaagaatgttgga
tggaaagatttcactgcctacagatggcatctgatccacagaccgagaacaggacatatt
agagttgtgatgtacgagggcaaaaagatcatggctgattctggcagcatctatgacaag
acatatgcaggtggcaggctaggtctttttgtcttctcacaagagatggtatacttctca
gacctcaagtatgaatgcagagatgtataa
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