Sulfitobacter dubius: R1T39_04110
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Entry
R1T39_04110 CDS
T09506
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdub
Sulfitobacter dubius
Pathway
sdub03030
DNA replication
sdub03410
Base excision repair
sdub03420
Nucleotide excision repair
sdub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R1T39_04110 (ligA)
03410 Base excision repair
R1T39_04110 (ligA)
03420 Nucleotide excision repair
R1T39_04110 (ligA)
03430 Mismatch repair
R1T39_04110 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdub03032
]
R1T39_04110 (ligA)
03400 DNA repair and recombination proteins [BR:
sdub03400
]
R1T39_04110 (ligA)
Enzymes [BR:
sdub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R1T39_04110 (ligA)
DNA replication proteins [BR:
sdub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R1T39_04110 (ligA)
DNA repair and recombination proteins [BR:
sdub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R1T39_04110 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R1T39_04110 (ligA)
MMR (mismatch excision repair)
DNA ligase
R1T39_04110 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R1T39_04110 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WOI29896
LinkDB
All DBs
Position
complement(824126..826246)
Genome browser
AA seq
706 aa
AA seq
DB search
MTSQIEVAALDKAQAETELARLAELLSAANTAYHTEDAPEISDAEYDALKRRNAAIEQRF
PELKRSDSPSEQVGAPVADGFGKVRHAVSMLSLANAFDAEDVTEFDARIRKYLGLGGNAP
LAYTAEPKIDGLSLSLRYENGVLKQAATRGDGSVGENVTANARTIADIPHELKNAPDLLE
VRGEVYMSHADFAALNARQAETGGKTFANPRNAAAGSLRQLDAEITRARPLRFFAYAWGA
LATPLAETQKGAIDRLADLGFSTNPLTALCDGPNDMVAHYEQIEAQRATLGYDIDGVVYK
VDDLALQERLGFRSTTPRWAIAHKFAAELAWTRLEGIDIQVGRTGALSPVARLQPVTVGG
VVVSNATLHNEDYIKGLDSKGAEIRGGKDVRVGDWVQIYRAGDVIPKVADVDLSKRPEDA
APFVFPTTCPECGSDAIREPGDAVRRCTGGLICPAQAVEKLKHFVARGAFDIEGLGAKQV
EQFYHDGWIAEPADIFTLKERYGSGVQQLKNREGWGPKSADNLFQAIEDKREIPMARLIF
ALGIRHVGEAASNLIALHYGDWDSFEAAMAEARGLDGPAWDDLIGVDGVGSVMAGSLVSA
FAQEAERASIDRLVAHLTVVPAERPDTEGSPVAGKTVVFTGTLEKMSRAEAKARAERLGA
KVSGSVSAKTDILVAGPGAGSKAKKAADLGIETLDEDGWLALIEGK
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcccagatcgaggtggcagcgctggacaaggcgcaagcagaaacggaactggcg
cggttggcagagttgctgagtgcggccaacacggcctatcatacggaagatgcgcccgaa
atctcggatgcggaatatgatgcgctgaagcggcgcaacgcagcgatcgaacagcgtttc
cccgaactaaaacgaagcgatagcccctcggagcaagtcggtgcaccggtagccgacggc
tttggcaaggtgcgccatgcggtgtcgatgctgtcgctggccaatgcctttgacgcagag
gatgtgacagagttcgatgcgcggattcgcaagtacttggggcttgggggcaatgcgccg
ctggcttatactgctgagcctaagatcgatggtctgtcgctctctctgcgctatgagaac
ggggtgctcaagcaggccgccacccgcggcgatggttcggtgggtgagaatgtcaccgcc
aatgcgcgcaccattgccgacattccgcatgagctaaagaacgcgcctgacctgctggag
gtgcgcggcgaagtctacatgagccatgccgatttcgcggcgctgaacgcgcggcaggcc
gaaacggggggcaagacctttgccaatccgcgcaacgccgccgccggatcgttgcggcag
cttgatgcggaaatcacccgtgcgcgtccgcttcggttctttgcctatgcttggggcgcg
ctcgcgaccccgctggccgaaacgcaaaagggcgcgatcgaccggttggcggatctgggg
ttttccaccaacccgctgactgcgctttgtgatggtcccaacgacatggtggctcattat
gagcagatcgaagcgcagcgcgccacgcttggctatgatatcgatggtgtggtctacaag
gtcgatgacctcgccctacaggaacgccttggctttcgctcgacaacgccccgctgggcg
atcgcgcataaattcgcggctgaactggcttggacacggctggaaggcatcgacattcag
gttggccgcaccggggcgctgtcccccgtggcgcggttgcagccggtcacagtcggcggg
gtcgtcgtctccaacgcgacgctgcacaatgaggattacatcaaggggctcgacagtaag
ggtgctgagatccgtggtggtaaagacgtgcgcgttggagattgggtgcaaatctaccgc
gcgggcgatgtgattcccaaagtggcggatgttgacctatccaaacgccccgaggatgcg
gcgcccttcgtctttcccaccacctgcccggaatgcggctcggatgcgatccgtgagccg
ggcgatgcggtgcggcgctgcacaggcgggctgatctgcccggcgcaggctgttgaaaag
ctgaaacatttcgtcgcccgcggggcctttgacatcgaagggctcggggccaaacaggtt
gagcaattctaccacgacggttggatcgcggagcctgcggatattttcaccttgaaagag
cgctatggtagcggcgtgcagcagttgaagaaccgcgaaggatgggggccgaaatccgcg
gacaacctattccaagccattgaggataagcgcgaaatccctatggcgcggctgatcttt
gccctcggcatccgccatgtgggcgaggcggcgtcgaacctcatcgcattgcattacggc
gactgggacagttttgaggccgccatggccgaagcgcgcgggctggatggccccgcgtgg
gatgacctgatcggtgtcgatggcgttggcagtgtcatggcaggctcgctggtttcggcc
ttcgcgcaggaggccgagcgcgcctccatcgaccggctggtcgcgcatctgaccgtggtt
ccagcggaacgacccgataccgaaggcagcccggtggcgggcaaaacggtcgttttcacc
ggcaccctggagaagatgagccgcgccgaggccaaggcacgggcggagcgtttgggggcc
aaggtctcaggatcggtcagtgccaagactgacattctcgtggccggtccgggggcaggt
tccaaagccaagaaagctgccgatttggggattgagactttggacgaggacggctggctc
gccttgatcgaaggcaaatga
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