Solanum dulcamara (climbing nightshade): 129880447
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Entry
129880447 CDS
T09577
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129880447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129880447
Enzymes [BR:
sdul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129880447
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129880447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
PTCB-BRCT
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
129880447
NCBI-ProteinID:
XP_055810457
LinkDB
All DBs
Position
2:22763209..22807430
Genome browser
AA seq
1173 aa
AA seq
DB search
MASSAVDGGGNSSVGGEDIKFSVMVSLFRWIQKSKSSVQKRSKFRKFIDTFCRKPQDNFA
AMRLILPGLDRERGSYGLKEHVLATCLIDALAMSRESDDARRLLNWRKGGPKTGSNAGNF
SLVAAEVLQRRQGIASAGLTIKELNDFLDHLASSENRAEKTSILSDLIRNTNAQEMKWII
MIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVR
PQLALRVSNASAAWKKLHGKEVVVECKFDGDRIQIHRNNSELHFFSRNFLDHQEYAHGMS
DVITQNILADKCILDGEMLVWDASINRFAEFGSNQEIAKVAREGLDSDRQLCYVAFDILY
VGDTSVIHRSLKERQEILQKVVKPIKGRLEILVPNGGLNAHRLSGEPCWSIIARNVDDVD
KFFTETVENRDEGIVLKDLTSKWEPSDRSGKWLKLKPDYVRPGSDLDVLIIGGYYGSGRH
GGEVAQFLVGLAEPSAPNIHPRRFISFCRVGTGVSDEERNTIVTRLKPYFRKYEYPKQAP
PAFYQVTNNAKERPDVWVESPEKSIIVSITSDIRTIRTEVFAAPYSLRFPRIDKVRYDKP
WHECLDVQSFVDLVHSTNGTTQRGADYGVGQDHESKTIRSSRKREKKNVSAVPSHFVQTD
VSLIKGDTSMFSAMVFYFANVPSSHTLESLHKMVVGHGGAFSMNLNKSVTHCIAAESRGI
KFQAGKLHGDVIQCSWLFDCCLQKKLLPLQPKYFLFLSDSTKKKMEAEVDEYSDSFYSDL
SIEELNVLLRNIEHSEDSKTVEFYKRKYCPKDKWARFHGCCIYFFIPNQCLEYSDCKALV
ELAMRRMKVGISVGGGKVGDNLFHATHVVVMSLPEFTINFNEVLNSFSEAEKHVLYNTKL
HVVGARWLEDSFKEDQKLLEESYCLKPSNFQVSISEKRHDKLKGHSEKCKRPSSPDKHGV
KIKAEGILDQCRAITLGKRDRKRDRGRPTASATEKGKVGINMPRRVKRKVTSSHAKIQDN
ESDESATSGEHRHYDESEATVGTCGSHETIAAHSSGIQKEDAVQDGETLKPGTAECSVIG
KRLDEAHETSYGSGNIARGKDKVKDKVDEKLEDPVDPVQAMLLHMIPHLESKPTRSVDTL
VKDDKPEADTNPSPKKKKKVSYKDVAGELLKDW
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggcgagttccgctgtagacggtggtggtaatagcagtgttggtggagaagacataaaa
tttagcgtaatggtcagccttttccgctggatacagaagagcaaatcatcagtgcagaag
cggtccaagttccggaagtttatagacaccttctgcaggaagcctcaggacaatttcgct
gccatgcgcctcattctccctggattagaccgtgagcgtggctcttatggacttaaggag
cacgtgctcgccacttgcctcattgacgcacttgccatgtcccgcgaatccgatgatgcc
cgccgtctcctcaactggcggaaaggtggccccaaaactggctcaaatgccggcaacttc
tctcttgttgccgctgaggtcctccagcgcagacagggaatagcttctgctgggctaaca
attaaggaactaaatgacttccttgatcacttggcctcaagtgaaaacagagcagagaag
acttcaattttgtctgatctaatcaggaatacaaatgctcaagaaatgaaatggattata
atgataattctgaaagatcttaagttgggaattagtgaaaagagcatcttccacgagttc
catccagatgcagaggacttattcaatgtcacatgcgatttaaaactagtttgtgaaaag
ttgagggacagaagtcaacggcataaacgtcaggacattgaagttggaaaacctgtccgc
cctcagctggctcttagggtcagcaatgcatctgctgcgtggaaaaagcttcacgggaaa
gaagtagtggttgagtgcaaatttgatggggatcgcatccagattcatagaaataattct
gagctacacttcttctcaagaaactttctggatcatcaagagtatgctcatggaatgtcc
gatgttattacacagaacattcttgctgacaaatgcatactcgatggtgaaatgttagtt
tgggatgcatcaataaaccgctttgcagagtttggttccaatcaagaaatagcaaaggtg
gcaagagagggtcttgatagtgataggcagttgtgttatgttgcgttcgatattctttat
gttggggataccagtgttattcatcgaagcttgaaggaacgtcaagagattctccagaaa
gttgtgaagcccataaaaggccgtttagaaattttggtccctaatggtggtcttaatgct
catcgtctttctggggagccatgttggtcgatcattgctcgtaatgttgacgatgttgat
aaattcttcacagaaactgttgagaacagagatgaaggaattgttttaaaagatttaact
tcaaaatgggaaccaagtgatcggagtggaaaatggctaaagttgaagcctgattatgtt
cgacctggctctgatttggatgttcttattatcggaggctactatggttctgggcgacat
ggaggagaggtagctcaatttctggtgggtcttgctgagccttcggctccaaatatacat
cccagaaggttcatttctttttgcagagtaggcactggagtttctgatgaggaacgcaat
accatagtaactcgattaaagccctatttcaggaagtatgagtacccgaagcaggcacca
ccagctttttatcaagtaacaaataatgcaaaagagcgaccagatgtgtgggttgaaagt
ccagagaaatccatcattgtttcaattacaagtgacattagaacaataagaactgaggtg
tttgctgctccatacagcttgagatttccgcgtattgataaagtcagatatgacaagcct
tggcatgagtgtcttgatgtgcaatcatttgttgatcttgtacattcaaccaatggtacc
acgcagaggggggctgattatggggttgggcaggatcacgaatcaaagaccattaggtcg
tcaagaaaacgagagaagaagaatgtttctgcagttccttctcattttgttcagactgac
gtgtctctaatcaagggtgacacatcaatgttctctgccatggtgttttattttgctaat
gtgccttcatcacatacacttgaatccttgcacaaaatggtggtcggacatgggggtgct
ttctccatgaatttgaataagtcagttactcattgtatagcggctgaaagtagaggtatc
aagtttcaagctggaaaacttcacggagatgttattcaatgctcttggctctttgactgc
tgtctgcaaaagaagctccttcctttacagccaaagtattttcttttcctttctgattca
acaaagaaaaagatggaagcagaagtggatgaatattctgattctttctactctgacctc
agcattgaagaacttaatgtgcttttgagaaatattgaacactcagaagactccaaaact
gttgagttctacaagagaaagtactgtcccaaggataaatgggctcgatttcatggttgc
tgcatttattttttcattccaaaccagtgtctggaatattcagattgcaaggctttagtg
gaacttgctatgagaaggatgaaagttggaatttctgtgggtggtgggaaagttggtgac
aacctttttcatgctacccatgttgtcgtcatgtctctaccagagtttaccataaacttc
aatgaagtgttaaatagtttctcagaggcagagaagcatgttttgtacaatacaaagctg
catgtagtcggagcacggtggttggaggattcctttaaagaggaccagaagttgcttgag
gagagttattgccttaagcctagcaattttcaagtgtcaatctctgagaagagacatgat
aagctaaaaggtcattctgaaaagtgcaaaagaccatcttcccctgataaacatggagta
aaaatcaaagcagaaggaattctagaccagtgccgagccatcacgctcggaaagagggac
aggaaacgagatagaggaagacctactgctagtgctacagaaaaagggaaagtggggatc
aacatgccacggagagttaaacgcaaggtcacaagtagtcatgctaagattcaagataat
gaatctgatgaaagtgctacttcaggtgagcatcgtcattatgatgagagtgaagcgact
gttgggacttgtggaagccatgaaactattgcagcgcatagctcaggaattcagaaagag
gatgctgtacaagatggtgaaacacttaaaccagggactgctgaatgcagtgtgatcggt
aaaagattggatgaagctcacgaaacttcatatggaagtggaaatattgccaggggcaaa
gacaaagtcaaagacaaggtggatgaaaagctggaagaccctgtagatccagtccaagct
atgctactgcatatgataccccacttggaaagtaagccaaccagaagcgtggacactctt
gtaaaagacgacaagccagaggcagatactaatcctagtcctaaaaagaaaaagaaagtt
agctataaagatgtagctggtgagttgctcaaagattggtga
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