Solanum dulcamara (climbing nightshade): 129889403
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Entry
129889403 CDS
T09577
Name
(RefSeq) probable E3 ubiquitin-protein ligase RZFP34
KO
K10144
RING finger and CHY zinc finger domain-containing protein 1 [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129889403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdul04121
]
129889403
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129889403
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129889403
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zinc_ribbon_6
zf-CHY
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4
zf-C3HC4_2
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
129889403
NCBI-ProteinID:
XP_055820659
LinkDB
All DBs
Position
5:66313808..66319594
Genome browser
AA seq
311 aa
AA seq
DB search
MGDIVIEHSGTPHYEALNLQNVKASENDADLVQSFCGSYLPEDGAREEKSTCTEALDRGY
LEYGCSHYRRRCRIRAPCCNEIFDCRHCHNEAKNNINIDQKLRHEIPRHKVERVICSLCD
TEQEVRQVCINCGVCMGRYFCETCKLFDDDISKRQYHCNGCGICRIGGMENFFHCPKCRC
CYSVLLRNSHPCVEGAMHHDCPVCFEYLFESINDVTVMPCGHTIHQNCLKEMQEHYQYAC
PLCSKSVCDMSKVWEKFDMEIAATPMPEPYQDKKVWILCNDCGITSEVQFHFVAQKCPCC
KSYNTRQTRGR
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgggagacatagtgattgaacattcagggacgccacattatgaggccttaaacttgcaa
aatgttaaagcatctgagaatgatgctgatctggttcagagtttctgtgggagctacttg
cctgaggatggtgcacgtgaagaaaaatcgacttgtactgaagcccttgacagaggatac
ttggaatatggctgttcccactatcgccgtagatgtcgcattagagccccatgctgcaat
gagatatttgactgcaggcattgtcataatgaagctaagaacaatatcaacattgaccag
aaacttcgacatgagattcctcgtcacaaggtggaaagggttatatgctcactttgtgat
actgagcaagaggttcggcaagtttgcatcaattgcggtgtgtgcatggggagatatttc
tgtgaaacgtgtaagctatttgatgacgatatatccaaaagacagtatcactgcaatggt
tgtggaatatgcaggattggtgggatggagaacttcttccactgtcccaaatgcagatgt
tgttattcagttctgttgaggaacagccacccctgtgtagagggggcaatgcatcatgac
tgtcctgtttgttttgagtatctctttgagtcgattaatgatgtaacagtcatgccttgt
ggacacactattcaccagaactgcttgaaggagatgcaggaacactaccaatatgcttgt
cccctctgctctaagtcggtatgtgatatgtcaaaggtgtgggagaaatttgacatggag
attgctgcaacaccgatgcccgaaccttatcaagacaagaaggtttggatcctttgtaat
gattgtggaatcacctcagaagtgcaatttcactttgtggcccagaaatgtccatgttgc
aaatcttacaacacccgccaaacaagaggcagatag
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