Solanum dulcamara (climbing nightshade): 129893396
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Entry
129893396 CDS
T09577
Name
(RefSeq) DNA repair protein RAD16-like isoform X1
KO
K15083
DNA repair protein RAD16
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129893396
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
129893396
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_5
Prok-RING_4
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
129893396
NCBI-ProteinID:
XP_055824888
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All DBs
Position
6:complement(9283048..9292318)
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AA seq
953 aa
AA seq
DB search
MSSDWKHNARSNDEVVHTAEVFNMVKQEQMNVVTEKDWEYRALKARRKERRKDREKKQED
RPTLMWETWDEKYDKWLVKHFKDDLALDNQNELLCETAEPSSDMIVPLFRYQKEWLFWAL
KQEESTSKGGILADEMGMGKTIQVIALVLAKRELGKAISKSSLLSSSSSTKQELSAAKGT
LILCPMVSVLQWVTEINRCTMEGSNKILVYHGSNRRKLSHNIEEYDFVITTYSTVEAEYR
KNVMRPKQKCKWCGKAYYEEKLSIHMKRFCGPDGVKTAKQSKKQRKRLKLDMELLMQKTD
FMESETYMEITDNMESETNVQKEGSTKSETDMKKTGSTKDMKCSSMAEKGKNNGSMDNSS
SVSQNLPQQKSILHSVKWDRIILDEAHYVKDRRCNTTKATLSLKSSYKWALSGTPIQNLV
GELYSLVRFLQIGPYSFYFCKDCDCRTLDYSSTSECPQCPHKSVRHFCWWNRYIATPIKH
EGSFGGGRDAMFLLKHKILKSILLRRSKKGRAADLALPLKIVTLRKDSLDVKEEDYYMSL
YNKSQAQFNTYVKGGTLMNNYAHIFELLTRLRQAVDHPYLVVYSSTALAKMAHSGNVEQP
CGLCHDAVEDPAVTSCMHVFCKTCLIDFAASVRQVSCPLCSELLTVDFTANNDNVNQNSK
PTLKGFRSSSILNRIQLDDFQSSTKIDALREEIRFMIERDGSAKGIVFSQFTSFLDLIHY
SLQKSGINCVQLVGSMSIDARAAAVTRFTEDPDCRIFLMSLKAGSVALNLTVASQVFMMD
PWWNPAVEHQAQDRIHRIGQYKPVRIVRFVIENTVEEKILKLQEKKELVFEGNYSTPCNA
IWKLITYDLEFSLENDGISWSCLWKMIAYLEFSLENWKMPVKLLSFTWTRWLVCLKCLRP
PVWSGCYKILPIFGSCRSWCGCCVLFASSCCKPNCSANFINILLLEAVSIILQ
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagattggaagcacaatgccagatcaaatgatgaagttgttcacacagcagaa
gttttcaatatggtgaaacaagaacaaatgaatgtagttactgaaaaagactgggaatat
cgtgcattgaaggcaaggagaaaagaaaggagaaaagaccgtgagaagaaacaagaagac
agaccaactttaatgtgggagacttgggacgaaaaatatgacaaatggcttgtgaaacac
ttcaaagatgatttggctttggataatcagaatgagttattgtgtgaaacagcagagcca
tcatcagatatgattgtgccattgttcaggtaccagaaagagtggttgttttgggcactt
aagcaagaagaatctacatccaaagggggcattcttgctgatgagatgggaatggggaaa
actatccaagtgatagcacttgttcttgctaaacgggaattagggaaagcaattagcaaa
tccagtttattgtcatcttcatccagtacaaagcaggaactctcagcagcaaaaggcact
cttatcttatgtcctatggtttctgtccttcagtgggttactgagatcaatcgatgcacc
atggaaggtagcaacaaaattcttgtttatcatggttccaacagaaggaagcttagccac
aatattgaggaatatgattttgtcatcaccacgtactccactgttgaggctgaatatagg
aaaaatgtgatgcgtccaaaacaaaagtgcaagtggtgtggcaaagcatattatgaagaa
aagttatccattcacatgaagaggttttgtggaccagatggtgttaaaactgccaagcaa
tcaaagaagcagaggaagaggttaaaacttgacatggaattgttgatgcagaaaacagat
tttatggagtcggagacttatatggagataacagataatatggagtcagagacgaatgtg
cagaaagaaggttctaccaagtcggagactgatatgaagaaaacaggtagtaccaaggac
atgaagtgtagtagcatggcagaaaaaggcaaaaataatggttctatggataattcatcc
agtgtaagtcaaaatttgccacagcagaagtcaattttgcattcggtgaagtgggatcgc
atcatcttggatgaggctcattatgtaaaagataggcgctgcaacacgacaaaagctact
ctttctttgaaatcttcttataagtgggccttaagtggtactccgattcagaatcttgtt
ggagaattgtattcacttgtccgtttcctacaaataggaccctactctttttacttttgc
aaggactgtgattgcagaacacttgactatagctctacatccgagtgcccacaatgcccc
cacaaatctgtacggcacttttgctggtggaatagatacattgctacacctataaagcat
gaagggagttttgggggtggtagagatgcaatgttccttttgaagcacaaaattctaaaa
agcatcctactaagacgtagcaaaaaaggaagagctgctgatcttgctcttcctcttaaa
attgttactttgaggaaagattctttggatgtcaaagaagaggactactacatgtcattg
tacaacaaaagccaggcacaatttaatacttatgttaaaggtggaacgttgatgaacaac
tacgcacacatttttgagctgctaacacgcctacggcaggcagttgatcatccatacctt
gtggtgtactcgagtactgctttggctaaaatggcgcactctggtaatgttgagcaacct
tgtggcttatgtcatgatgcagtagaagatccagctgttacttcttgcatgcatgtcttt
tgcaagacgtgtttgatagactttgctgcaagtgttagacaagtgtcatgccctctgtgt
tctgaactacttacagttgacttcactgcaaataatgacaatgtgaatcagaattctaaa
ccgactctcaaagggtttaggtcctcaagtatactgaacagaattcagctggatgatttc
cagtccagcactaaaatagatgctttgagggaagaaattaggttcatgattgaaagagat
ggttctgcaaaaggaatagttttcagccagttcacgtcttttttggatttgatacactat
tctcttcagaagtcgggcatcaattgtgttcaattagttggatctatgtctattgatgca
agagctgcagctgttaccagatttactgaggatccagattgcaggatatttcttatgagc
ttaaaagctggaagtgttgcactcaatcttacagttgcatcacaggttttcatgatggat
ccttggtggaatcctgctgtggagcaccaagcccaagatcgaatccatcgaatagggcaa
tataaacctgtcaggattgtgagatttgtgattgaaaatacagttgaagagaagatctta
aagttacaggagaagaaggaacttgtttttgaaggaaactattcaacaccttgtaatgcc
atctggaaattgataacatatgacttggagttttctttggaaaatgatggcatatcatgg
agttgtctttggaaaatgatagcatatcttgagttctctttggaaaactggaaaatgcca
gtcaaattgttgagctttacttggacaaggtggcttgtatgtttgaagtgtctcagacca
cccgtctggtcaggttgttataaaatcttgccaatatttgggagctgtagaagttggtgt
ggctgttgtgtgctctttgcttcctcttgttgcaagccaaattgttctgccaacttcatt
aatatacttctgttggaggcagtgtcgatcattcttcaataa
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