Solanum dulcamara (climbing nightshade): 129894348
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Entry
129894348 CDS
T09577
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein GMI1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sdul03036
]
129894348
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129894348
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
129894348
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
129894348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
Motif
Other DBs
NCBI-GeneID:
129894348
NCBI-ProteinID:
XP_055825977
LinkDB
All DBs
Position
7:15888778..15911077
Genome browser
AA seq
1613 aa
AA seq
DB search
MSSKRHCDDFSAETLRKKPARVLRIQLDSNEEVGTNEVKVFYFRVLLPNGITLELQVPGP
PSEMPVEDFVILVRREYQNLGRRTELRKPKRQINWTSKDLHFVDAFENRITKMLDFRNFK
SDKSHMLRLCDGLAEADKYENMWDLTPDTDLLKELPEEYTFETALADLIDNSLQAVWSKS
TDQRRLISLELTKNRITIFDTGPGMDGSAENSIVKWGKMGASLHRLSRDRGIGGKPPYLT
PYFGMFGYGGPIASMHLGRRASVSSKTKECKKVFVLHLERESLLCCSSSQQTWRTDGNVR
DPLEDELQDSTDGSFTKVEIFYPKMRSESVQKLQYTLKDIYFPYIQCDEVSKSGKTMMPI
EFQVNGTNLAEIEGGEVATTNLLSCNGPEFVMQLSFHVKDSNGLKVGSGPKSFLEAHARL
RCVYFPVVQGKESIEVILEKLEADGYGITENFESFSHVSVRRLGRLLPDARWSWLPFMEP
KLKKSDRAEVLKRCCFRVKCFIETDAGFNPTPSKTDLAHHHPCTIALRNFGNKPSDKEND
VLIEITKDGKKLSILQLEKLYQDWLFEMHDRYDEEIDCGEDQPTFVIGPLHKKELGVSSD
VLRIHKAFQRKGITWKAGQKIKILKGACRGFHKNNIFATLEFIILEGWQGDSGGEARIIC
RPLNVPAESGCRLTCDKGCACFEIRDSKSLPISVIDAGKCLSVDSTEWENQILKHQEKTT
PSSIDIFDAEQCQELDIEGALPQDVVDAGHEPPEEITAVVRPASFSSVTASKSLDQKYIM
KDNFEMTLEIKFKADENEKELRHIYSGQLTPSSLKGFHGLYMFPLKKKSPNLFQKAGIYL
FRFSLKESRTISLKEVRVKALSEAASWELVSDGKSTHSVRVGSCFPEVLSVGCCDKFSNR
IPFKSKTKIEMKLSSGGRAISSECSYDQCITHDRYTMKFKNVTIESSELDMIRPSYKATL
RIDSKEDPFFVAIPCAVIPGPLQRVLLRPVDLGKKLVPGMVLKELALETFDKYGNHMRKD
EHIKLALEGLHLLDKGDSFYKVDDHGCVNLSGTLKVTAGYGKPVSLSVLSGDEVVFKKEF
QTDRRSLRVASEVPKVCAAGSHLEEIVFEVINSAGEVDEDINSEEEDGHSHTLLIRQDSL
RGEDNVRYSFHRGRCIVRSIPLPNNEGLFCFVASHSRFHELQTSIEVHVEKAVISTHEPT
QPRSPMKEILLLEDSYFKGRGTVSDNTYDGSIMLFNDSCSSRDLEDRLKKLGDDICRYGL
CIRQCEANVESLNIKQSNIELEMSNLGACIGLDSFHDVGYDKDMVVEKIEGKADSAAAVI
HKLLRSPKPEQLYHKLAHDILGAVALLGEVQTHKLSSMLAAYLGEDQMLAVVCKSRAAAR
ALENYQMDGNVNCASDLNILAAKLGISIKGRYLVICLEDIRPYTRGVSSDPQRELALPHL
TLSNGKTPPGFLGYAVNMIFLPAEHLQFRTASGHGLRETLFYRLLGKLQVYRSREQLYMA
SSCIEDGAVSLDGGMMRGNGVVSASVGSEEPCILFPVICLERQLLLSPEKVERMKRIEDL
KLKRNQLQDQIQEELRNGAKYKKKLVKKLEYKKHIDDRLEPSPGMYYSDMDIS
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtaaaaggcactgtgatgatttttcggctgaaacgctgagaaagaaaccagct
agggttttaagaatccaacttgattcaaatgaggaagttggtactaatgaagtaaaagtt
ttttattttcgggttcttttgcctaatggaataactttagagttgcaagtacctgggcca
cctagtgaaatgcctgttgaggactttgttattttagtgaggcgagaataccaaaatctc
gggcgaagaacagagttacgtaagcccaaaagacagattaattggactagcaaggatttg
cattttgtagatgctttcgagaacaggataacgaagatgttggatttcaggaattttaaa
tccgacaagtctcatatgctaaggctctgtgatggtttagctgaagcagataaatatgag
aatatgtgggaccttacaccagatactgatttgttgaaggaactgcctgaagagtataca
tttgaaaccgcactggcggatttgatcgataattcattgcaggcagtatggtctaagtct
acagaccagagaagattaataagtctggagctaactaagaacaggattacaatatttgac
acaggccctggaatggatggaagtgctgaaaactcaatcgtgaaatggggcaagatggga
gcttctctacatagattatcaagagacagaggcataggaggaaaacctccatacttaacg
ccttactttggtatgtttggttatggaggacctattgcatctatgcatttgggaagacga
gcctcagtttcttcaaagacaaaggagtgtaagaaagtattcgtgttacatcttgagaga
gaatctttactctgctgttcttcttctcaacaaacttggaggactgatggaaatgttaga
gacccattggaagatgaactacaagactcaactgatggtagcttcactaaagttgaaatt
ttttatccaaagatgagaagcgaaagcgtacagaaactacaatacacactgaaagatata
tactttccttatattcagtgtgatgaagtatcaaaatcaggaaaaaccatgatgcctatt
gagtttcaggtcaatggcactaatttagcggaaattgaaggtggagaggtggcaacgaca
aacttactgtcctgcaatggtccagagtttgtaatgcaacttagctttcacgtaaaggat
agcaatggtttgaaagttggttcaggaccaaaatcattcctcgaagcacatgctcgcctg
aggtgtgtttattttccggtggtgcagggtaaagagagtattgaggtgatattggaaaag
ctagaggcagatgggtatggaattactgagaattttgaaagtttcagccatgtttctgtc
cgtcggttgggtcgtctacttccagatgctcgatggtcttggcttccctttatggaacca
aagctaaaaaagagtgatagggcggaagtcctgaagagatgctgctttagagtaaaatgc
ttcatagagaccgatgctggtttcaacccaacaccgtcaaagaccgacttagcacatcac
catccttgcaccattgcattaaggaactttggtaacaagccttcagataaagagaatgat
gttctcattgagataaccaaagatggaaagaagttgtctatcttgcaattggagaagcta
tatcaggactggctgtttgagatgcatgatcgctatgacgaggagattgactgtggagag
gatcaacctacttttgtaattggccctttgcacaagaaagagcttggcgtttcttccgat
gttctgagaattcacaaggctttccagaggaaaggcataacttggaaagcagggcagaag
attaaaattttgaagggagcttgtaggggtttccataagaacaacattttcgccacattg
gaatttattatccttgaaggatggcagggggactcgggcggtgaggctcgaatcatctgc
aggccattaaatgtccctgctgagagtggttgtcgcctcacatgtgataaaggatgtgct
tgctttgaaatccgcgattcaaaatctttgccgattagtgtgattgatgctggaaagtgc
ttatctgttgatagtacagaatgggagaaccaaattttgaaacaccaagagaaaaccact
ccatcatcaattgacatatttgatgccgagcaatgtcaggaattggacattgagggggcg
ctacctcaggatgttgttgatgctggacatgaacctccagaggagattactgcagttgtt
cgtccagcttcttttagttctgttaccgcatccaaaagtttggatcagaaatacattatg
aaagataattttgagatgactctagagatcaaatttaaagcagatgagaatgagaaagaa
cttagacatatttactctgggcaattgactccttcatcgcttaaaggatttcatggtcta
tatatgttccccctgaagaagaagtcaccaaatctttttcagaaagcaggcatttatcta
tttcgattttctcttaaagaaagtcgtacaatttctttaaaggaagtgcgcgtaaaagca
ttgtctgaagctgctagttgggaacttgtaagtgatgggaagagtacacacagtgtaagg
gttggttcttgttttccagaggttttaagtgttggatgttgtgataaattctccaatcgt
ataccattcaagtcgaagacaaagatagagatgaagttaagttctggcggcagagccatt
tcatccgaatgcagttatgatcaatgtattacacatgacagatataccatgaagtttaag
aatgtaaccattgaaagtagtgaattggatatgattcgaccaagttataaagctacatta
cgtatagattcaaaggaggatccattttttgtagctattccatgtgcagttattccagga
ccattgcaacgagtccttctgcgtcctgtagatttgggcaagaaattggttcctgggatg
gtacttaaggagcttgctcttgagacatttgacaaatatggtaaccatatgagaaaagat
gagcacatcaagctggcgctggaaggattacatttactagataaaggagattctttttat
aaggtcgatgatcatgggtgtgtaaatctaagtggaaccttgaaagtaacagcaggatat
ggtaaacctgtttccctttctgttttgtctggtgatgaagtagttttcaagaaagagttt
caaactgataggagatcgttgcgagttgcatctgaggtacctaaagtttgtgctgccggt
tctcatttggaagaaatcgtttttgaggttataaattctgctggtgaagtggatgaagat
atcaatagtgaagaggaagatggccactcccatacccttctgataaggcaggactcattg
aggggagaagacaatgtgagatacagcttccatcgtgggcgctgcattgtccgctccatt
cctcttccgaataacgaagggcttttctgctttgtagccagtcactctcgtttccatgag
ctgcagacaagcatagaggtgcatgttgagaaagcagtaatcagtacgcatgaacctacc
caacctagaagtcccatgaaagagattctgcttcttgaggattcatattttaaaggccga
ggaacggtgtctgataacacctatgatggaagtataatgctcttcaacgattcatgttct
tccagggatctggaagacagactaaaaaaacttggggatgatatttgcagatatggccta
tgcatcagacagtgtgaagcaaatgtggagtcacttaatattaagcaatcaaatattgag
cttgagatgtccaacttgggagcttgtatcggtcttgattcttttcacgacgtgggctat
gataaagacatggttgtggagaagattgaagggaaggcggacagtgcagctgctgttatc
cacaagctgctcagatcaccaaaacctgaacagctttatcacaaacttgctcatgacata
cttggcgcggttgcacttcttggagaggttcagacccataagcttagcagcatgcttgca
gcatatcttggagaagatcagatgcttgctgtagtatgcaaatcccgtgcagctgccaga
gctcttgaaaattatcaaatggatggaaatgtgaattgtgccagtgatcttaacatatta
gcagctaagcttggaatttccatcaagggtcgatatctggttatatgcctagaggatata
aggccatatacgcgaggagtcagcagtgatccccaaagagaacttgctcttccgcacctt
actttatcaaacggaaaaactcccccaggctttttgggctatgcggttaatatgatattc
cttcctgcagaacatttgcagtttagaactgcttcaggtcatggtctccgagagacatta
ttttatcgtctgcttggtaagcttcaagtctacaggtctagagagcaactttacatggca
agttcctgcattgaagatggtgcggtttccttggatggtggaatgatgagaggaaatgga
gttgtatctgcatctgttggatctgaggaaccatgcattctatttccagtcatctgtctg
gaaagacagttgctcctctcacctgagaaagtagaaagaatgaagagaatcgaagacttg
aagctgaaacgaaatcaattgcaagatcagatacaggaagagcttaggaatggagcaaag
tacaagaagaagttggtcaaaaagctagagtataaaaagcatatagatgatcggttggaa
ccttcgcccggaatgtactactctgacatggatatcagttga
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integrated database retrieval system
