Streptomyces durmitorensis: M4V62_01970
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Entry
M4V62_01970 CDS
T08503
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sdur
Streptomyces durmitorensis
Pathway
sdur03030
DNA replication
sdur03410
Base excision repair
sdur03420
Nucleotide excision repair
sdur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M4V62_01970 (ligA)
03410 Base excision repair
M4V62_01970 (ligA)
03420 Nucleotide excision repair
M4V62_01970 (ligA)
03430 Mismatch repair
M4V62_01970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdur03032
]
M4V62_01970 (ligA)
03400 DNA repair and recombination proteins [BR:
sdur03400
]
M4V62_01970 (ligA)
Enzymes [BR:
sdur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M4V62_01970 (ligA)
DNA replication proteins [BR:
sdur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M4V62_01970 (ligA)
DNA repair and recombination proteins [BR:
sdur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M4V62_01970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M4V62_01970 (ligA)
MMR (mismatch excision repair)
DNA ligase
M4V62_01970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M4V62_01970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
zf-ribbon_3
RlmA_N
Motif
Other DBs
NCBI-ProteinID:
UQT53943
LinkDB
All DBs
Position
485081..487165
Genome browser
AA seq
694 aa
AA seq
DB search
MTHMTTSAPVFADAAAYAQAVEDASKAAAAYYTGGTSALDDDAYDRLVRAIAEFEAEHPD
QVLPHSPTGKVAGGAVQGDVPHTVAMLSLDNVFAPEEFTTWTASVARRIGREVTRWNVQP
KLDGLAIAARYTDGRLTRIVTRGDGTAGEDVSHAIGTIEGLPGRLTEPVTVEVRGEVLMT
TGQFEHANTVRTAHGGAPFANPRNAAAGTLRAKDRAYTVPMTFFAYGLLPLPTTPADAAG
HLAELAHGDLLQYAADLGVRTPAGTSVPGVTLESVEDVLARVEEIAALRAELPFGIDGIV
IKADLAADQQAAGSGSRAPRWAIAFKLPAVEKITKLIDVEWNVGRTGIIAPRAVLEPVDI
DGSTVTYATLHNPSDITRRDLRIGDQVMVYKAGDIIPRVEAPVAHLRTGDEQPIVFPEVC
PQCGSPIDAGEQRWRCERGRDCHLVASLSYAAGRDQLDIEGLGASRVVQLVDAGLVADIA
DLFTLTREQLLGLERMGETSTDNLLAAIETAKTQPLSRVLCALGVRGTGRSMSRRIARHF
ATMDHIRAADAEAMQQVEGIGSEKAPVIVAELTELAPVIDKLTATGVNMTEPGATPPTPD
DRTETGTPAAPGPLDGMTVVVTGAMTGPLEQLSRNQMNELIERAGGKSSSSVSKRTSLVV
AGEGAGSKRAKAESLDIRLATPDEFAELVAALLT
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgactcacatgacaacctcagctcctgtgttcgccgatgccgctgcctacgcgcaggcg
gtcgaggacgcgtcgaaggccgcggccgcctactacacgggcggcacgtcggcgttggac
gacgacgcgtacgaccgcctggtgcgggccatcgcggagttcgaggccgagcaccccgac
caggtgctgccccactcgccgaccgggaaggtcgcaggcggcgccgtgcagggcgatgtg
ccgcacacggtggccatgctcagcctggacaacgtcttcgcgcccgaggagttcaccacc
tggaccgcctccgtggcccgccggatcggccgggaggtgacgcggtggaacgtacagccc
aagctggacggcctggccatcgccgcccgctacaccgacggccgcctcacccggattgtc
acccgcggggacggcacggccggagaggacgtctcgcatgccatcggcaccatcgagggc
ctgcccggccggctcaccgagccggtcaccgtggaggtgcggggcgaagtcctgatgacc
accggccagttcgagcacgccaacacggtgcgcaccgcgcacggcggcgccccgttcgcc
aacccgcgcaatgccgcggcgggcaccctgcgggccaaggaccgcgcgtacacagtgccg
atgacgttcttcgcctacggcctgctgcccctgcccaccactcccgccgacgccgccggg
cacctggccgagctggcccacggcgacctcctccagtacgccgccgatctcggcgtgcgg
actccggccggcacatcggtgcccggcgtcacgctggagagcgtcgaggacgtgctggcc
cgggtggaggagatcgccgcgctgcgggccgaactgcccttcgggatcgacgggatcgtc
atcaaggccgacctcgccgccgaccagcaggccgccggatccggaagccgggcccctcgc
tgggcaatcgcgttcaagctgcccgccgtcgagaagatcaccaagctgatcgacgtggag
tggaacgtcggccgcaccggcatcatcgccccgcgcgccgtcctggagccggtcgacatc
gacggctccaccgtcacgtacgcgacgctgcacaacccctccgacatcacccggcgcgac
ctgcgcatcggcgaccaggtgatggtctacaaggcgggcgacatcatcccccgcgtcgaa
gccccggtcgcccacctgcgcaccggggacgaacagccgatcgtcttccccgaggtgtgc
ccgcagtgcggctcccccatcgatgccggcgagcagcgctggcggtgcgaacgcggccgc
gactgccacctggtcgcctcgctgtcgtacgccgccgggcgcgaccagctcgacatcgag
ggcctcggcgcgagccgcgtcgtgcaacttgtcgacgcgggcctggtcgccgacatcgcc
gacctcttcaccctcacccgcgaacagctcctgggcctggagcggatgggcgagaccagc
acggacaacctcctggccgcgatcgagacggccaagacccagcccctctcccgggtcctg
tgcgcactgggcgtgcgcggcaccggccgctccatgtcccgccgcatcgcccggcacttc
gccaccatggaccacatccgtgccgccgacgcggaggcgatgcagcaggtcgagggcatc
ggcagcgagaaggcccccgtcatcgtggccgagctgaccgaactcgccccggtcatcgac
aaactcaccgcgaccggtgtgaacatgaccgagcccggcgccacaccccccacccccgac
gaccggaccgagaccggcacaccagcggccccgggcccgctggacggcatgaccgtggtc
gtcacgggcgccatgaccggcccgttggaacagctcagccgcaaccagatgaacgaactg
atcgaacgcgccggcggcaagtcgtcctccagcgtctccaagcgcaccagcctggtcgtc
gccggggaaggcgcggggtccaagcgcgccaaggccgagtcgctcgacatccgtctggcc
accccggacgaattcgccgagctcgtggccgccctgctcacctga
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